Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(67)
  Primates
(0)
  Rodents
(38)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(49)
  Bacteria
(32)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(275)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(4)
  cDNA Array
(29)
  Oligo Array
(12)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(1)
  Other
(0)
  All
(49)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
21 GPL4680 Eurogentec S. pombe ORF array (B130F) 22,176 Karolinska Inst 2006-12-19 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe
cDNA Array spotted DNA/cDNA, Eurogentec S. pombe ORF array (B130F),
22 GPL4635 QArray Oligo OL19kA Prints 0301-0307 19,200 University of Illinois 2006-12-05 Vodkin laboratory, University of Illinois Glycine max
Glycine max
Oligo Array spotted oligonucleotide, QArray Oligo OL19kA Prints 0301-0307,
23 GPL4523 Judelson/Syngenta_Phytophthora infestans_15645_V.1 15,917 University of California 2006-11-05 Affymetrix Phytophthora infestans
Phytophthora infestans
GeneChip in situ oligonucleotide, Judelson/Syngenta_Phytophthora infestans_15645_V.1, The GeneChip is not available commercially.
24 GPL4521 Maize SAM1.2 Array 15,680 Iowa State University 2006-11-03 Schnable Laboratory at Iowa State University(ISU) Zea mays
Zea mays
cDNA Array spotted DNA/cDNA, Maize SAM1.2 Array,
25 GPL4414 Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based)_for Buck MJ et al. 15,397 Univeristy of North Carolina at Chapel Hill 2006-10-11 Lieb Lab at UNC-CH Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based)_for Buck MJ et al., Whole-genome microarrays with PCR-amplified products represent ORFs, intergenic regions, and other noncoding regions (rDNA, tRNA, transposons, transposon long terminal repeats, telomeres, centromeres, and introns). Generally, each ORF was represented from start codon to stop codon. The intergenic regions consisted of the DNA between annotated ORFs divided such that PCR products were not longer than 1.5 kb, with a few exceptions. The noncoding regions conform to boundaries as annotated by the Saccharomyces Genome Database (SGD) as of the year 2000. Mitochondrial segments did not necessarily conform to annotated functional boundaries. This platform covers several print runs, in which print plates were arranged in different orders.
26 GPL4462 Saccharomyces cerevisiae 6.4K array (Y6.4K), version 4 13,056 University of Gothenburg 2006-10-18 UHN Microarray Center Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Saccharomyces cerevisiae 6.4K array (Y6.4K), version 4,
27 GPL4550 Eurogentec S. pombe ORF array (E020F) 11,520 Karolinska Inst 2006-11-10 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe
cDNA Array spotted DNA/cDNA, Eurogentec S. pombe ORF array (E020F),
28 GPL4423 Wistar Yeast YA04 array 9,600 The Wistar Institute 2006-10-12 Wistar Institute Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Wistar Yeast YA04 array, http://www.wistar.org/research_facilities/facilities/genomics/review.html
29 GPL4705 RIKEN 16K tobacco cDNA microarray (Slide1A) 9,216 RIKEN 2006-12-28 RIKEN Nicotiana tabacum
Nicotiana tabacum
cDNA Array spotted DNA/cDNA, RIKEN 16K tobacco cDNA microarray (Slide1A), Mirror type slides were used.
30 GPL4706 RIKEN 16K tobacco cDNA microarray (Slide2A) 9,216 RIKEN 2006-12-29 RIKEN Nicotiana tabacum
Nicotiana tabacum
cDNA Array spotted DNA/cDNA, RIKEN 16K tobacco cDNA microarray (Slide2A), Mirror type slides were used.
31 GPL4707 RIKEN 16K tobacco cDNA microarray (Slide1B) 9,216 RIKEN 2006-12-29 RIKEN Nicotiana tabacum
Nicotiana tabacum
cDNA Array spotted DNA/cDNA, RIKEN 16K tobacco cDNA microarray (Slide1B), Mirror type slides were used.
32 GPL4708 RIKEN 16K tobacco cDNA microarray (Slide2B) 9,216 RIKEN 2006-12-29 RIKEN Nicotiana tabacum
Nicotiana tabacum
cDNA Array spotted DNA/cDNA, RIKEN 16K tobacco cDNA microarray (Slide2B), Mirror type slides were used.
33 GPL4709 RIKEN 16K tobacco cDNA microarray (Slide3A) 9,216 RIKEN 2006-12-29 RIKEN Nicotiana tabacum
Nicotiana tabacum
cDNA Array spotted DNA/cDNA, RIKEN 16K tobacco cDNA microarray (Slide3A), Mirror type slides were used.
34 GPL4710 RIKEN 16K tobacco cDNA microarray (Slide4A) 8,448 RIKEN 2006-12-29 RIKEN Nicotiana tabacum
Nicotiana tabacum
cDNA Array spotted DNA/cDNA, RIKEN 16K tobacco cDNA microarray (Slide4A), Mirror type slides were used.
35 GPL4522 ORFs of Cryptococcus neoformans var. grubii (serotype A, H99) 6,849 UC San Francisco 2006-11-05 UC San Francisco Cryptococcus neoformans var. grubii
Cryptococcus neoformans var. grubii
Oligo Array spotted oligonucleotide, ORFs of Cryptococcus neoformans var. grubii (serotype A, H99),
36 GPL4416 NimbleGen Saccharomyces cerevisiae oligonucleotide photolithographic maskless array 6,333 University of Wisconsin-Madison 2006-10-11 NimbleGen Saccharomyces cerevisiae
Saccharomyces cerevisiae
Oligo Array in situ oligonucleotide, NimbleGen Saccharomyces cerevisiae oligonucleotide photolithographic maskless array,
37 GPL4625 UHN_yeast_6.4kv6 6,295 Technion- Israel Institute of Technology 2006-12-05 UHN microarray center Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, UHN_yeast_6.4kv6,
38 GPL4641 University Health Services (Toronto) Yeast ORF, Version 6.4k 6,295 Harvard Medical School 2006-12-06 University Health Services (UHS) Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, University Health Services (Toronto) Yeast ORF, Version 6.4k,
39 GPL4565 Valencia yeast v4 6,144 Universitat de Valencia 2006-11-16 Seccion de Chips de DNA-SCSIE (University of Valencia) Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Valencia yeast v4, Nylon macroarray (7 x 11 cm) with 6019 single spotted yeast ORF probes. Probes are PCR fragments comprising the whole ORF (5568 cases) or a 1000 bp-fragment from the ORF 3' end (451 cases).
40 GPL4566 Valencia yeast v5 6,144 Universitat de Valencia 2006-11-16 Seccion de Chips de DNA-SCSIE (University of Valencia) Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Valencia yeast v5, Nylon macroarray (7 x 11 cm) with 6019 single spotted yeast ORF probes. Probes are PCR fragments comprising the whole ORF (5568 cases) or a 1000 bp-fragment from the ORF 3' end (451 cases).
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