Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(102)

Plants
(75)

Phages
(0)

SAGE RsaI
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(26)

Other
(1)

All
(75)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
21	GPL10138	SAGE:22:BfaI:Arabidopsis thaliana	0		2010-03-05		Arabidopsis thaliana	Other	other, SAGE:22:BfaI:Arabidopsis thaliana, This is a virtual platform for SAGE libraries generated for Arabidopsis thaliana using BfaI as an anchor enzyme.
22	GPL10142	454 GS FLX (Arabidopsis lyrata)	0		2010-03-05		Arabidopsis lyrata	HT Sequencing	high-throughput sequencing, 454 GS FLX (Arabidopsis lyrata),
23	GPL10143	454 GS FLX (Capsella rubella)	0		2010-03-05		Capsella rubella	HT Sequencing	high-throughput sequencing, 454 GS FLX (Capsella rubella),
24	GPL10144	Illumina Genome Analyzer (Nicotiana benthamiana)	0		2010-03-05		Nicotiana benthamiana	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Nicotiana benthamiana),
25	GPL10145	Illumina Genome Analyzer II (Nicotiana benthamiana)	0		2010-03-05		Nicotiana benthamiana	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Nicotiana benthamiana),
26	GPL10135	SAGE:22:NlaIII:Oryza sativa	0		2010-03-04		Oryza sativa	SAGE NlaIII	SAGE NlaIII, SAGE:22:NlaIII:Oryza sativa, This is a virtual platform for SAGE libraries generated for Oryza sativa using NlaIII as an anchor enzyme.
27	GPL10120	Solanum tuberosum 12.3K RLP array Version IV	12,288	AIT Austrian Institute of Technology GmbH	2010-03-02	AIT Austrian Institute of Technology GmbH	Solanum tuberosum	cDNA Array	spotted DNA/cDNA, Solanum tuberosum 12.3K RLP array Version IV,
28	GPL10115	Agilent Whole_genome_Podospora anserina_v.2_4X44K (oligonucleotides microarray development)	45,220	Institut de GÃƒÂ©nÃƒÂ©tique et Microbiologie UMR 8621	2010-03-01	Agilent	Podospora anserina	Oligo Array	in situ oligonucleotide, Agilent Whole_genome_Podospora anserina_v.2_4X44K (oligonucleotides microarray development), Podospora anserina Oligonucleotide Microarray by Agilent Technologies. Intermediate microarray with 4 different probes per CDS used to select one probe per CDS to develop a custom expression microarray. Barecodes of arrays with this design are 251636610001 to 251636610005. See Podopora anserina database's web site at http://podospora.igmors.u-psud.fr/padb/index.php
29	GPL10116	Agilent-018343 Whole Podospora anserina Genome Microarray v.3 4x44K	45,220	Institut de GÃƒÂ©nÃƒÂ©tique et Microbiologie UMR 8621	2010-03-01	Agilent	Podospora anserina	Oligo Array	in situ oligonucleotide, Agilent-018343 Whole Podospora anserina Genome Microarray v.3 4x44K, Podospora anserina 60 mers Oligonucleotide Microarray by Agilent Technologies : microarray with a unique probe per CDS. The final array design contained 10,539 probes for nuclear CDS and 17 mitochondrial CDS probes. Each probe was replicated four times on each 44K array. See Podopora anserina database's web site at http://podospora.igmors.u-psud.fr/padb/index.php
30	GPL10104	Custom Agilent Saccharomyces cerevisiae 8x15K Yeast_LH_03	15,744	Agriculture & Agri-Food Canada (AAFC)	2010-02-25	Agilent Technologies	Saccharomyces cerevisiae	Oligo Array	spotted oligonucleotide, Custom Agilent Saccharomyces cerevisiae 8x15K Yeast_LH_03,
31	GPL10110	Agilent Candida dubliniensis 12K V.2	12,034	Dublin Dental School and Hospital	2010-02-25	Agilent	Candida dubliniensis	Oligo Array	in situ oligonucleotide, Agilent Candida dubliniensis 12K V.2, All sequences were derived from the C. dubliniensis genome hosted by the Sanger Institute at http://old.genedb.org/genedb/cdubliniensis/ . You can use the locus tags provided below to search GeneDB at this link. Multiple sequences may be downloaded using the 'List Download' tool. The 'Browse Catalogues' tool will allow you to visualise individual chromosomes.
32	GPL10109	Illumina Genome Analyzer (Porphyra yezoensis)	0		2010-02-25		Porphyra yezoensis	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Porphyra yezoensis),
33	GPL10098	Agilent-021113 Tobacco Gene Expression Microarray (Feature Number version)	45,220	Agilent Technologies	2010-02-24	Agilent Technologies	Nicotiana tabacum	Oligo Array	in situ oligonucleotide, Agilent-021113 Tobacco Gene Expression Microarray (Feature Number version), Arrays of this design have barcodes that begin with 16021113 or 2521113. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
34	GPL10100	Nimblegen T.atroviride&virens Trichochip-1 393K v1.0	35,682	University of Salamanca	2010-02-24	NimbleGen	Hypocrea virens,Trichoderma atroviride	Oligo Array	in situ oligonucleotide, Nimblegen T.atroviride&virens Trichochip-1 393K v1.0, Design exception: Probe ID names including virens were incorrectly labelled in the design process as atroviride and viceversa. SEQ ID names are correctly labelled and belong to the referred genomes.
35	GPL10084	Vanderbilt University/NimbleGen Saccharomyces cerevisiae 11470 Array	11,470	Vanderbilt University	2010-02-22	Nimblegen	Saccharomyces cerevisiae	Oligo Array	in situ oligonucleotide, Vanderbilt University/NimbleGen Saccharomyces cerevisiae 11470 Array,
36	GPL10085	CapitalBio Cotton 12K cDNA Array v1.0	11,232	Nanjing Agricultural Uiversity	2010-02-22	CapitalBio Corporation	Gossypium hirsutum	cDNA Array	spotted DNA/cDNA, CapitalBio Cotton 12K cDNA Array v1.0,
37	GPL10082	AB SOLiD System 3.0 (Arabidopsis lyrata)	0		2010-02-22		Arabidopsis lyrata	HT Sequencing	high-throughput sequencing, AB SOLiD System 3.0 (Arabidopsis lyrata),
38	GPL10088	AB SOLiD System 3.0 (Arabidopsis thaliana)	0		2010-02-22		Arabidopsis thaliana	HT Sequencing	high-throughput sequencing, AB SOLiD System 3.0 (Arabidopsis thaliana),
39	GPL10079	Illumina Genome Analyzer (Saccharomyces bayanus x Saccharomyces cerevisiae)	0		2010-02-19		Saccharomyces bayanus x Saccharomyces cerevisiae	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Saccharomyces bayanus x Saccharomyces cerevisiae),
40	GPL10066	090122_Orange_MY_exp	62,797	Centro de citricultura 'Sylvio Moreira' /IAC	2010-02-18	NimbleGen	Citrus sinensis,Citrus trifoliata,Citrus reticulata	Oligo Array	in situ oligonucleotide, 090122_Orange_MY_exp, NimbleGen design name 2005-08-12_B_fragilis_24mer, NimbleGen design ID 2451. A expression design for 62,876 unigenes (18,712 unigenes of C. sinensis; 31,583 unigenes of C. reticulata and 12,581 unigenes of P. trifoliate) selected from CitEST database assembled from the EST submitted to NCBI (Genebank accession number EY649559 to EY842485). Each probe is replicated 2 times. The design includes random GC and other control probes. The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.

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