Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(102)

Plants
(75)

Phages
(0)

SAGE RsaI
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(26)

Other
(1)

All
(75)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
41	GPL10055	Ocimum Biosolutions Arabidopsis 25K OciChip	24,672	Ocimum Biosolutions	2010-02-17	Ocimum Biosolutions	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Ocimum Biosolutions Arabidopsis 25K OciChip,
42	GPL10050	[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array - custom CDF (AtH1_At_TAIR)	20,514	University of Texas at Austin	2010-02-16	Affymetrix	Arabidopsis thaliana	GeneChip	in situ oligonucleotide, [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array - custom CDF (AtH1_At_TAIR),
43	GPL10045	Agilent Yeast 8X15K conversion (Agilent-016322)	15,744	University of Washington	2010-02-12	Agilent Technologies	Saccharomyces cerevisiae	Oligo Array	in situ oligonucleotide, Agilent Yeast 8X15K conversion (Agilent-016322), Yeast 8X15K conversion Agilent-016322
44	GPL10039	Yeast_16p_DNA_Feb_2010	6,185	Universitat Autonoma de Barcelona	2010-02-12	DNA microarray facility. Dept. Biochemistry, Universitat Autonoma de Barcelona	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Yeast_16p_DNA_Feb_2010,
45	GPL10037	[mbiAth1a520184] Mendel Arabidopsis Genome Array	48,972	Mendel Biotechnology, Inc.	2010-02-11	Affymetrix	Arabidopsis thaliana	GeneChip	in situ oligonucleotide, [mbiAth1a520184] Mendel Arabidopsis Genome Array, The Mendel Arabidopsis Genome Array is a custom array designed using Affymetrix GeneChip CustomExpress Array Design Guidelines. Feature size is 11 micron. Perfect-match only probe sets are tiled, nominally using 11 probes per transcript, and randomly distributed across the array. Larger numbers of probes were used for certain sequences. The sequences used for probe selections are mostly based on the TAIR6 (www.arabidopsis.org) Nov 15, 2005 release of the Arabidopsis genome. Additional gene models from Mendel proprietary sequences were also used. There are 48,972 probe sets on the array, which have been mapped to 29,543 TAIR AGI identifiers. A number of probe sets from previous Arabidopsis arrays were also tiled. Standard Affymetrix controls were used on the chip along with additional controls made from internal sequences. Probe sequences unavailable due to proprietary nature.
46	GPL10024	University of Cape Town Cowpea 9K drought stress SSH library	9,216	University of Pretoria	2010-02-10	ACGT Microarray Facility, University of Pretoria, Pretoria, South Africa (http://www.microarray.up.ac.za )	Vigna unguiculata	cDNA Array	spotted DNA/cDNA, University of Cape Town Cowpea 9K drought stress SSH library,
47	GPL10009	Illumina Genome Analyzer (Brachypodium distachyon)	0		2010-02-04		Brachypodium distachyon	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Brachypodium distachyon),
48	GPL9997	Agilent/WalbotLab Zea mays + Ustilago maydis (dual organism) 4x44K array	45,220	Stanford University	2010-02-01	Agilent	Zea mays,Ustilago maydis	Oligo Array	in situ oligonucleotide, Agilent/WalbotLab Zea mays + Ustilago maydis (dual organism) 4x44K array, designed by Walbot Lab
49	GPL9989	Meyerowitz Lab Arabidopsis Operon Array Version 4	30,741	Center for Research in Agricultural Genomics	2010-01-29	Meyerowitz laboratory at the California Institute of Technology	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Meyerowitz Lab Arabidopsis Operon Array Version 4, This microarray is based on the Arabidopsis Genome Oligo Set Version 1.0 and on the Arabidopsis Genome Oligo Set Version 1.0 Upgrade (Operon, Alameda, CA). These sets consist of a total of 30,194 oligonucleotides.
50	GPL9984	Arabidopsis thaliana 43.7K Ath_Agilent_v2_Riechmann	43,700	Center for Research in Agricultural Genomics	2010-01-27	Agilent	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, Arabidopsis thaliana 43.7K Ath_Agilent_v2_Riechmann,
51	GPL9982	Arabidopsis thaliana 32.7K Ath_Agilent_v1_Riechmann	32,672	Center for Research in Agricultural Genomics	2010-01-26	Agilent	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, Arabidopsis thaliana 32.7K Ath_Agilent_v1_Riechmann,
52	GPL9983	Illumina Genome Analyzer II (Miscanthus x giganteus)	0		2010-01-26		Miscanthus x giganteus	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Miscanthus x giganteus),
53	GPL9964	Custom Arabidopsis 22K 60-mer oligo array	21,080	King's College London	2010-01-22	Ceres Inc.	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Custom Arabidopsis 22K 60-mer oligo array, target transcript description (Aug 2001 annotation)
54	GPL9956	DPMB/AG Lab Agilent Rice array (4x44K) AMADID No. 15241	42,418	University of Delhi South Campus	2010-01-21	Agilent	Oryza sativa	cDNA Array	spotted DNA/cDNA, DPMB/AG Lab Agilent Rice array (4x44K) AMADID No. 15241,
55	GPL9931	Ectocarpus siliculosus tiling array ChIP1	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP1, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
56	GPL9932	Ectocarpus siliculosus tiling array ChIP2	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP2, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
57	GPL9933	Ectocarpus siliculosus tiling array ChIP3	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP3, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
58	GPL9934	Ectocarpus siliculosus tiling array ChIP4	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP4, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
59	GPL9935	Ectocarpus siliculosus tiling array ChIP5	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP5, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
60	GPL9936	Ectocarpus siliculosus tiling array ChIP6	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP6, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.

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