Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(47)		   GeneChip
(1,712)		   Tiling Array
(694)		   cDNA Array
(1,562)		   Oligo Array
(1,630)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(777)		   Other
(18)		   All
(6,479)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
41 Allele-specific expression between Arabidopsis genus (GSE29037) [Tiling Array] Arabidopsis thaliana AtSNPtile 1 (GPL13483) Institute for Evolution and Biodiversity 2011-05-03 Arabidopsis thaliana
Arabidopsis thaliana		 23,864,064
(994,336 x 24) 		4 12 8 by_platform
by_series
42 The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program (GSE36128) [Oligo Array] NimbleGen 090918 Vitus vinifera exp HX12 (GPL13936) University of Verona 2012-02-28 Vitis vinifera
Vitis vinifera		 22,576,806
(139,363 x 162) 		9 3 3 12 21 87 18 9 by_platform
by_series
43 Mapping Nucleosome positions in WT and delta isw2 cells (GSE8814) [Tiling Array] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (Sc03b_MR_v04) (GPL6476) FHCRC 2007-08-19 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 21,085,712
(2,635,714 x 8) 		4 4 by_platform
by_series
44 Becker_etal_SNParray_BSA (GSE25509) [Tiling Array] Arabidopsis thaliana SNP-tiling array AtSNPtile ver. 2 (GPL10855) University of Chicago 2010-11-19 Arabidopsis thaliana
Arabidopsis thaliana		 19,342,952
(2,417,869 x 8) 		8 by_platform
by_series
45 Maize Comparative Genomic Hybridization (CGH) between B73, Mo17, M0022 (RIL), and M0023 (RIL) (GSE16938) [Oligo Array] NimbleGen Zea Mays 2.1M array (GPL8790) Iowa State University 2009-07-02 Zea mays
Zea mays		 19,116,261
(2,124,029 x 9) 		9 by_platform
by_series
46 Binding data for nine transcription factors for S. cerevisiae salt response (GSE15639) [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) Yale University 2009-04-10 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 18,235,260
(303,921 x 60) 		60 by_platform
by_series
47 Expression quantitative trait loci (eQTL) analysis of Brassica rapa under varying soil phosphorus (P) supplies (GSE27052) [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) University of Western Australia 2011-02-03 Brassica rapa
Brassica rapa		 17,862,240
(105,072 x 170) 		170 by_platform
by_series
48 Genome-wide Analysis of Mono-, Di- and Trimethylation of Histone H3 Lysine 4 in Arabidopsis thaliana (GSE13613) [Tiling Array] Arabidopsis thaliana genome tiling 1.0R array (GPL7639) UCLA 2008-11-14 Arabidopsis thaliana
Arabidopsis thaliana		 17,257,194
(2,876,199 x 6) 		6 by_platform
by_series
49 Establishing a reference epigenome in arabidopsis seedlings (GSE24710) [Tiling Array] Custom NimbleGen A. thaliana ChIP-chip tiling array [HD2.3X] (GPL11005) Institut de Biologie de l'Ecole Normale Supérieure 2010-10-14 Arabidopsis thaliana
Arabidopsis thaliana		 17,071,680
(711,320 x 24) 		24 by_platform
by_series
50 Genomic Distribution of Maize Facultative Heterochromatin Marked by Trimethylation of H3K27 (GSE39456) [Oligo Array] NimbleGen 3x1.4M Maize Methylation Array (GPL15621) University of Minnesota 2012-07-18 Zea mays
Zea mays		 16,811,856
(1,400,988 x 12) 		2 2 8 by_platform
by_series
51 Genome-wide gene expression atlas of maize inbred line B73 (GSE27004) [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) Iowa State University 2011-02-01 Zea mays
Zea mays		 16,648,560
(92,492 x 180) 		39 12 18 78 33 by_platform
by_series
52 Monitoring Homology Search during DNA Double-Strand Break Repair in vivo (GSE44844) [Tiling Array] 100304 Scer2 MS Chip Stefan Jentsch MPI Biochemistry S.cerevisiae 135K Tiling Array Version 2 (GPL16746) Max Planck Institute of Biochemistry 2013-03-04 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 16,522,094
(135,427 x 122) 		122 by_platform
by_series
53 Isw2 and Ume6 ChIP-chip in transcription factor deletion (Δume6, Δnrg1, Δcin5, and Δsok2) and DNA-looping deficient (sua7-1) cells (GSE39542) [Tiling Array] NimbleGen Saccharomyces cerevisiae 730K 090319_Scer_KH_CGH (GPL15833) Fred Hutchinson Cancer Research Center 2012-07-20 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 16,168,540
(702,980 x 23) 		23 by_platform
by_series
54 Expression data from BY4743 and dbr1 yeast (GSE5470) [Tiling Array] Affymetrix S. cerevisiae tiling 1.0R (Sc03b_MR_v03.bpmap) (GPL4065) University of Washington 2006-08-07 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 15,961,860
(2,660,310 x 6) 		6 by_platform
by_series
55 Isw2 ChIP in S cerevisiae (GSE8815) [Tiling Array] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (Sc03b_MR_v04) (GPL6476) FHCRC 2007-08-19 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 15,814,284
(2,635,714 x 6) 		6 by_platform
by_series
56 Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions (GSE24836) [Tiling Array] Custom NimbleGen A. thaliana ChIP-chip tiling design AT7v1.1 (GPL10919) INRA - CNRS - UEVE 2010-10-20 Arabidopsis thaliana
Arabidopsis thaliana		 14,068,002
(360,718 x 39) 		36 3 by_platform
by_series
57 A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies (GSE13161) [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) Yale University 2008-10-10 Oryza sativa
Oryza sativa		 13,359,940
(60,727 x 220) 		4 4 32 180 by_platform
by_series
58 Analysis of epigenomic changes in hybrids Arabidopsis thaliana Col-0, C24 and Cvi accessions (GSE24836) [Tiling Array] Custom NimbleGen A. thaliana ChIP-chip tiling design AT7v1.2 (GPL10920) INRA - CNRS - UEVE 2010-10-20 Arabidopsis thaliana
Arabidopsis thaliana		 13,346,566
(360,718 x 37) 		34 3 by_platform
by_series
59 A global analysis of QTLs for expression variations in rice shoot at early seedling stage (GSE22564) [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) Huazhong Agricultural University (HZAU) 2010-06-24 Oryza sativa Indica Group
Oryza sativa Indica Group		 12,968,106
(57,381 x 226) 		226 by_platform
by_series
60 Chromosome copy number variation in Cryptococcus neoformans influences virulence and occurs in isolates from AIDS patients (GSE29675) [Oligo Array] NimbleGen Cryptococcus H99 Whole Genome CGH array (12x135K) (GPL13662) The University of British Columbia 2011-06-01 Cryptococcus neoformans
Cryptococcus neoformans		 12,955,488
(134,953 x 96) 		96 by_platform
by_series
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