Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(33)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(58)
  GeneChip
(1,932)
  Tiling Array
(758)
  cDNA Array
(1,617)
  Oligo Array
(2,013)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(1)
  HT-Seq
(1,165)
  Other
(20)
  All
(7,611)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
81 Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons. (GSE37075) [Oligo Array] Nimblegen_HD2_Arabidopsis (GPL7143) University of California, Los Angeles 2012-04-06 Arabidopsis thaliana
Arabidopsis thaliana
12,010,110
(2,001,685 x 6)
6 by_platform
by_series
82 Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription (GSE40872) [Oligo Array] Agilent-036031 Schizosaccharomyces pombe sp10b [ProbeName version] (GPL16060) Biochemie Zentrum Heidelebrg 2012-09-13 Schizosaccharomyces pombe
Schizosaccharomyces pombe
11,604,840
(967,070 x 12)
12 by_platform
by_series
83 rilkit-eqtl analysis (random pair design). Tools to optimize the use of RIL populations for natural diversity studies and QTL cloning (GSE28791) [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) INRA 2011-04-21 Arabidopsis thaliana
Arabidopsis thaliana
11,225,628
(34,647 x 324)
324 by_platform
by_series
84 Gene expression in whole-roots of a Populus trichocarpa and Populus deltoides pseudo-backcross population (GSE20118) [Oligo Array] UF Nimblegen Populus trichocarpa Array (GPL7234) University of Florida 2010-01-30 Populus trichocarpa x Populus deltoides
Populus trichocarpa x Populus deltoides
11,067,211
(67,897 x 163)
163 by_platform
by_series
85 Dissecting the developmental transcriptomes of rice (GSE19024) [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) Huazhong Agricultural University 2009-11-13 Oryza sativa Indica Group
Oryza sativa Indica Group
10,902,390
(57,381 x 190)
4 16 36 26 52 16 24 16 by_platform
by_series
86 Small RNA SBS signatures identified from maize using Illumina's SBS technology (GSE12173) [Other] Small RNA SBS signatures indentified from maize using Illumina's SBS technnology (GPL7071) University of Delaware 2008-07-19 Zea mays
Zea mays
10,773,106
(5,386,553 x 2)
2 by_platform
by_series
87 Chromosome copy number variation in Cryptococcus neoformans influences virulence and occurs in isolates from AIDS patients: clinal and environmental strains (GSE29671) [Oligo Array] NimbleGen Cryptococcus H99 Whole Genome CGH array (12x135K) (GPL13662) The University of British Columbia 2011-06-01 Cryptococcus neoformans
Cryptococcus neoformans
10,661,287
(134,953 x 79)
79 by_platform
by_series
88 Medicago truncatula seed development under different growth conditions (GSE53526) [Oligo Array] NimbleGen custom IRHS_Medtr_102K_v1 (GPL16373) INRA 2013-12-19 Medicago truncatula
Medicago truncatula
10,620,792
(102,123 x 104)
104 by_platform
by_series
89 Mapping chromatin remodelling in delta isw2 cells (GSE8813) [Tiling Array] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (Sc03b_MR_v04) (GPL6476) FHCRC 2007-08-19 Saccharomyces cerevisiae
Saccharomyces cerevisiae
10,542,856
(2,635,714 x 4)
4 by_platform
by_series
90 Diurnal and circadian gene expression profile of leaf throughout the entire growth of rice in the field (GSE36040) [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version) (GPL6864) National Institute of Agrobiological Sciences 2012-02-23 Oryza sativa Japonica Group
Oryza sativa Japonica Group
10,174,500
(45,220 x 225)
225 by_platform
by_series
91 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance (GSE9687) [GeneChip] [Soybean] Affymetrix Soybean Genome Array (GPL4592) Virginia Tech 2007-11-26 Glycine max
Glycine max
9,787,200
(61,170 x 160)
160 by_platform
by_series
92 Genomic DNA 1:1 mixtures in Allele Specific Expression study (GSE16505) [Tiling Array] Arabidopsis thaliana SNP-tiling array AtSNPtile ver. 1 (GPL8655) University of Chicago 2009-06-08 Arabidopsis thaliana
Arabidopsis thaliana
9,737,124
(2,434,281 x 4)
4 by_platform
by_series
93 Epigenetic and genetic influences on DNA methylation variation in maize populations (GSE46949) [Oligo Array] NimbleGen 12x270K Custom Maize Methylation Array (GPL17181) University of Minnesota 2013-05-15 Zea mays
Zea mays
9,490,040
(271,144 x 35)
8 27 by_platform
by_series
94 Transcriptomic analysis of rice (GSE21494) [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version) (GPL6864) National Institute of Agrobiological Sciences 2010-04-23 Oryza sativa Japonica Group
Oryza sativa Japonica Group
9,450,980
(45,220 x 209)
108 12 38 51 by_platform
by_series
95 Global mapping of epigenetic modifications of histone H3 Lysine 4 di- and trimethylation in Rice (GSE9925) [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) Yale University 2007-12-17 Oryza sativa
Oryza sativa
9,329,616
(388,734 x 24)
12 12 by_platform
by_series
96 affy_sunyfuel_drought_sunflower-Sunyfuel (GSE25719) [GeneChip] [SYNG010s520477] Affymetrix Helianthus annuus 94K (GPL10568) INRA 2010-11-30 Helianthus annuus
Helianthus annuus
9,090,336
(94,691 x 96)
96 by_platform
by_series
97 Differential transcriptome analyses of three wheat genotypes in their response to Fusarium Head Blight and trichothecenes (GSE28973) [GeneChip] [wheat] Affymetrix Wheat Genome Array (GPL3802) Agriculture and Agri-Foods Canada 2011-04-29 Triticum aestivum
Triticum aestivum
8,825,760
(61,290 x 144)
144 by_platform
by_series
98 Plasticity of the ripening process among berry classes (GSE49569) [Oligo Array] NimbleGen 090918 Vitus vinifera exp HX12 (GPL13936) Oregon State University 2013-08-06 Vitis vinifera
Vitis vinifera
8,779,869
(139,363 x 63)
63 by_platform
by_series
99 Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis (GSE36515) [Tiling Array] Custom NimbleGen A. thaliana ChIP-chip tiling array [HD2.3X] (GPL11005) IBENS 2012-03-14 Arabidopsis thaliana
Arabidopsis thaliana
8,535,840
(711,320 x 12)
12 by_platform
by_series
100 A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen -- ChIP-chip (GSE47341) [Tiling Array] Histoplasma_capsulatum_G217B_ChIP_1 (GPL17166) University of California 2013-05-23 Ajellomyces capsulatus
Ajellomyces capsulatus
8,405,760
(420,288 x 20)
20 by_platform
by_series
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