Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,640)		   Primates
(0)		   Rodents
(303)		   Mammals
(76)		   Vertebrates
(0)		   Invertebrates
(179)		   Plants
(777)		   Bacteria
(251)		   Viruses
(0)		   Phages
(0)		   Unclassified
(28)		   All
(4,254)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(71)		   Tiling Array
(0)		   cDNA Array
(491)		   Oligo Array
(193)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(22)		   Other
(0)		   All
(777)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(42)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(157)		   young aerial structure
(0)		   root
(12)		   meristem/growing tissue
(34)		   flower/sexual organ
(8)		   seed/fruit/grain
(0)		   pooled
(186)		   unclassified
(338)		   all
(777)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
661 GSM464368 E0xE120 Glucose 3000209746_R 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E120 title:E0xE120 Glucose 3000209746_R description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
662 GSM464369 E0xE150 Glucose 3000148624_L 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E150 title:E0xE150 Glucose 3000148624_L description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
663 GSM464370 E0xE150 Glucose 3000148624_R 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E150 title:E0xE150 Glucose 3000148624_R description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
664 GSM464371 E0xE150 Glucose 3000209198_L 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E150 title:E0xE150 Glucose 3000209198_L description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
665 GSM464372 E0xE150 Glucose 3000209198_R 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E150 title:E0xE150 Glucose 3000209198_R description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
666 GSM464373 E0xE150 Glucose 3000209699_L 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E150 title:E0xE150 Glucose 3000209699_L description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
667 GSM464374 E0xE150 Glucose 3000209699_R 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E150 title:E0xE150 Glucose 3000209699_R description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
668 GSM464375 E0xE150 Glucose 3000209731_L 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E150 title:E0xE150 Glucose 3000209731_L description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
669 GSM464376 E0xE150 Glucose 3000209731_R 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 E150 title:E0xE150 Glucose 3000209731_R description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
670 GSM464389 E0xZSP Glucose 3000209199_L 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 ZSP title:E0xZSP Glucose 3000209199_L description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
671 GSM464390 E0xZSP Glucose 3000209199_R 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 ZSP title:E0xZSP Glucose 3000209199_R description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
672 GSM464400 E0xZSP Glucose 3000209700_L 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 ZSP title:E0xZSP Glucose 3000209700_L description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
673 GSM464401 E0xZSP Glucose 3000209700_R 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 ZSP title:E0xZSP Glucose 3000209700_R description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
674 GSM464402 E0xZSP Glucose 3000209725_L 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 ZSP title:E0xZSP Glucose 3000209725_L description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
675 GSM464403 E0xZSP Glucose 3000209725_R 4,608 Instituto de Química - USP 2009-10-22 [cDNA Array] USP Blastocladiella emersonii 4.6 K Blasto3773 v2 (GPL4516) RNA Blastocladiella emersonii
Blastocladiella emersonii		 unclassified source_name:E0 ZSP title:E0xZSP Glucose 3000209725_R description:Fluorescence mean intensity and surrounding median background from each spot were obtained with ArrayVision v6.0 (Imaging Research, Inc). Unreliable spots, having intensities too similar to local background or saturated were filtered out. Spots presenting mean intensity below 2 times the standard deviation of its background in Cy3 and Cy5 simultaneously were eliminated from the subsequent analysis since their expression ratio is meaningless,. Saturated signals [intensity greater than >990 fluorescence units] were also discarded. Normalization was carried out by LOWESS fitting on a M versus S plot, where M is the fluorescence log-ratio of the heat shock time-point relative to the control condition [M=log2(ratio)] and S is the log-mean fluorescence intensity [S = log2((cy3+cy5)/2)].
676 GSM95526 Signal transduction analysis in sugarcane leaves (HB x LB replicate 1) 4,608 Universidade Estadual de Campinas - UNICAMP 2006-02-03 [cDNA Array] SUCAST1920v3 (GPL1376) RNA Saccharum officinarum
Saccharum officinarum		 leaf Signal transduction analysis in sugarcane leaves (HB x LB replicate 1)
677 GSM95546 Signal transduction analysis in sugarcane leaves (HB x LB replicate 2) 4,608 Universidade Estadual de Campinas - UNICAMP 2006-02-03 [cDNA Array] SUCAST1920v3 (GPL1376) RNA Saccharum officinarum
Saccharum officinarum		 leaf Signal transduction analysis in sugarcane leaves (HB x LB replicate 2)
678 GSM95547 Signal transduction analysis in sugarcane leaves (LB x HB replicate 1, dye swap) 4,608 Universidade Estadual de Campinas - UNICAMP 2006-02-03 [cDNA Array] SUCAST1920v3 (GPL1376) RNA Saccharum officinarum
Saccharum officinarum		 leaf Signal transduction analysis in sugarcane leaves (LB x HB replicate 1, dye swap)
679 GSM95548 Signal transduction analysis in sugarcane leaves (LB x HB replicate 2, dye swap) 4,608 Universidade Estadual de Campinas - UNICAMP 2006-02-03 [cDNA Array] SUCAST1920v3 (GPL1376) RNA Saccharum officinarum
Saccharum officinarum		 leaf Signal transduction analysis in sugarcane leaves (LB x HB replicate 2, dye swap)
680 GSM110500 Sugarcane transcriptome - ch1: MeJA treatment_6h_exp_2; ch2: MeJA_control_2 (L) 4,607 Universidade de São Paulo - USP 2006-05-24 [cDNA Array] SUCAST Sugarcane 2208 v1.0 (GPL3799) RNA Saccharum hybrid cultivar SP80-3280
Saccharum hybrid cultivar SP80-3280		 unclassified source_name:MeJA_6h_2 MeJA_control_2 title:Sugarcane transcriptome - ch1: MeJA treatment_6h_exp_2; ch2: MeJA_control_2 (L) description:Treatment with methyljasmonate; 0h x 6h (experiment 2)
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