Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,851)
  Primates
(60)
  Rodents
(2,564)
  Mammals
(41)
  Vertebrates
(39)
  Invertebrates
(59)
  Plants
(464)
  Bacteria
(78)
  Viruses
(0)
  Phages
(0)
  Unclassified
(146)
  All
(6,302)
 
  SAGE NlaIII
(5)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(132)
  Tiling Array
(15)
  cDNA Array
(222)
  Oligo Array
(90)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(464)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(23)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(12)
  flower/sexual organ
(6)
  seed/fruit/grain
(0)
  pooled
(76)
  unclassified
(347)
  all
(464)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
81 GSM34370 CEA_SGF:ALX036.faible 6,912 Ecole Normale Supérieure 2004-11-02 [cDNA Array] CEA_SGF:AIW (GPL1531) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Strain Y18daft2 (aft1d aft2d) grown in YPD to DO 0.5. RNA extraction with RNeasy kit (Qiagen). Strain CM3260 (wild-type) grown in YPD to DO 0.5. RNA extraction with RNeasy kit (Qiagen). title:CEA_SGF:ALX036.faible description:Strains CM3260 wild-type and Y18daft2 (aft1d aft2d) grown in YPD rich medium to DO 0.5. Extraction of RNAs with RNeasy kit (Qiagen). Indirect labeling. Hybridization on yeast array slide (CEA France).
82 GSM34371 CEA_SGF:ABO035.faible 3,360 Ecole Normale Supérieure 2004-11-02 [cDNA Array] CEA_SGF:ABO (GPL1533) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Strain W303a (wild-type) grown in YPD to DO 0.5 then in HU 200 mM for 2 hours. RNA extraction with RNeasy kit (Qiagen). Strain W303a (wild-type) grown in YPD to DO 0.5. RNA extraction with RNeasy kit (Qiagen). title:CEA_SGF:ABO035.faible description:Strain W303a grown in YPD rich medium to DO 0.5 (channel 2) or grown with 200 mM hydroxyurea (HU) during 2 hours (channel 1). Extraction of RNAs with RNeasy kit (Qiagen). Direct labeling. Hybridization on yeast array slide (CEA France).
83 GSM34374 CEA_SGF:ABO029.faible 3,360 Ecole Normale Supérieure 2004-11-02 [cDNA Array] CEA_SGF:ABO (GPL1533) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Strain W303a (wild-type) grown in YPD to DO 0.5. RNA extraction with RNeasy kit (Qiagen). Strain W303a (wild-type) grown in YPD to DO 0.5 then in HU 200 mM for 2 hours. RNA extraction with RNeasy kit (Qiagen). title:CEA_SGF:ABO029.faible description:Strain W303a grown in YPD rich medium to DO 0.5 (channel 1) or grown with 200 mM hydroxyurea (HU) during 2 hours (channel 2). Extraction of RNAs with RNeasy kit (Qiagen). Direct labeling. Hybridization on yeast array slide (CEA France).
84 GSM34372 CEA_SGF:ABP035.faible 3,264 Ecole Normale Supérieure 2004-11-02 [cDNA Array] CEA_SGF:ABP (GPL1534) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Strain W303a (wild-type) grown in YPD to DO 0.5 then in HU 200 mM for 2 hours. RNA extraction with RNeasy kit (Qiagen). Strain W303a (wild-type) grown in YPD to DO 0.5. RNA extraction with RNeasy kit (Qiagen). title:CEA_SGF:ABP035.faible description:Strain W303a grown in YPD rich medium to DO 0.5 (channel 2) or grown with 200 mM hydroxyurea (HU) during 2 hours (channel 1). Extraction of RNAs with RNeasy kit (Qiagen). Direct labeling. Hybridization on yeast array slide (CEA France).
85 GSM34373 CEA_SGF:ABP029.faible 3,264 Ecole Normale Supérieure 2004-11-02 [cDNA Array] CEA_SGF:ABP (GPL1534) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Strain W303a (wild-type) grown in YPD to DO 0.5. RNA extraction with RNeasy kit (Qiagen). Strain W303a (wild-type) grown in YPD to DO 0.5 then in HU 200 mM for 2 hours. RNA extraction with RNeasy kit (Qiagen). title:CEA_SGF:ABP029.faible description:Strain W303a grown in YPD rich medium to DO 0.5 (channel 1) or grown with 200 mM hydroxyurea (HU) during 2 hours (channel 2). Extraction of RNAs with RNeasy kit (Qiagen). Direct labeling. Hybridization on yeast array slide (CEA France).
86 GSM34569 Sup fraction after ChIP (0h) 8,441 The University of Tokyo 2004-11-03 [Tiling Array] SC3456a520015F (GPL1280) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Sup fraction after ChIP (0h) description:Sup fraction (0h) used for the normalization of GSM34215 and GSM34227.
87 GSM34570 Sup fraction after ChIP (4h) 8,441 The University of Tokyo 2004-11-03 [Tiling Array] SC3456a520015F (GPL1280) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Sup fraction after ChIP (4h) description:Sup fraction (4h) used for the normalization of GSM34232 and GSM34233.
88 GSM34571 Mock ChIP 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Mock ChIP description:Mock ChIP experiment using strain without tag.
89 GSM34572 Sup fraction after mock ChIP 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Sup fraction after mock ChIP description:Sup fraction of Mock ChIP experiment using strain without tag. Sup fraction used for normalization of GSM34571
90 GSM34573 Time Course Experiment after HO induction. Time (0h) ChIP fraction (I) 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S.cerevisiae title:Time Course Experiment after HO induction. Time (0h) ChIP fraction (I) description:Time Course Experiment after HO induction. Time (0h) ChIP fraction (I).
91 GSM34574 Time Course Experiment after HO induction. Time (0h) Chip fraction (II) 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (0h) Chip fraction (II) description:Time Course Experiment after HO induction. Time (0h) ChIP fraction (II). Only data for time (0h) are duplicated.
92 GSM34575 Sup fraction of Time (0h) 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Sup fraction of Time (0h) description:Time Course Experiment after HO induction. Time (0h) Sup fraction used for normalization of GSM34573 and GSM34574.
93 GSM34576 Time Course Experiment after HO induction. Time (2h) ChIP fraction 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (2h) ChIP fraction description:Time Course Experiment after HO induction. Time (2h) ChIP fraction.
94 GSM34577 Time Course Experiment after HO induction. Time (2h) Sup fraction 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (2h) Sup fraction description:Time Course Experiment after HO induction. Time (2h) Sup fraction used for normalization of GSM34576.
95 GSM34578 Time Course Experiment after HO induction. Time (4h) ChIP fraction 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (4h) ChIP fraction description:Time course experiment after HO induction (4h).
96 GSM34579 Time Course Experiment after HO induction. Time (4h) Sup fraction 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (4h) Sup fraction description:Time course experiment after HO induction (4h). Sup fraction used for normalization of GSM34578.
97 GSM34633 tomatidine_15 uM 9,335 Syngenta 2004-11-04 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae S288c title:tomatidine_15 uM description:RNA isolated from Saccharomyces cerevisiae S288c following 5 hours exposure to 15 uM tomatidine (dissolved in the carrier solvent DMF)
98 GSM34634 tomatidine_7.5 uM 9,335 Syngenta 2004-11-04 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae S288c title:tomatidine_7.5 uM description:RNA isolated from Saccharomyces cerevisiae S288c following 5 hours exposure to 7.5 uM tomatidine (dissolved in the carrier solvent DMF)
99 GSM34635 control 9,335 Syngenta 2004-11-04 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae S288c title:control description:RNA isolated from Saccharomyces cerevisiae S288c following 5 hours exposure to solvent DMF
100 GSM34637 Fhl1, array 2, upper half 5,784 Harvard Medical School 2004-11-04 [cDNA Array] Struhl Lab Yeast Double Intergenic Array (GPL1689) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Fhl1 IP IP from untagged strain title:Fhl1, array 2, upper half description:Fhl1 ChIP-chip
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