Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(88)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(298)		   GeneChip
(27,371)		   Tiling Array
(5,043)		   cDNA Array
(23,783)		   Oligo Array
(30,226)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(4,443)		   Other
(117)		   All
(91,454)		  
  brain
(306)		   blood
(1,138)		   connective
(192)		   reproductive
(456)		   muscular
(16)		   digestive
(44)		   liver
(0)		   lung
(76)		   urinary
(43)		   endo/exo-crine
(101)		   embryo
(123)		   adult aerial structure
(12,032)		   young aerial structure
(8,350)		   root
(4,758)		   meristem/growing tissue
(2,248)		   flower/sexual organ
(3,045)		   seed/fruit/grain
(3,122)		   pooled
(6,585)		   unclassified
(48,819)		   all
(91,454)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
21 GSM634228 TM-1 fiber_10DPA_rep1 4,983,793 Huazhong Agricultural University 2010-12-02 [HT Sequencing] Illumina Genome Analyzer (Gossypium hirsutum) (GPL9362) SRA Gossypium hirsutum
Gossypium hirsutum		 unclassified source_name:cotton fiber cells title:TM-1 fiber_10DPA_rep1
22 GSM648140 Oryza sativa L. ssp. japonica rdr701-1_HT panicle sRNA 4,952,454 Institute of Genetics and Developmental Biology 2011-01-03 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 other flower/sexual organ young panicles (4cm)
23 GSM549098 trifoliate orange 4,876,395 Nanjing Agricultural University 2010-06-02 [HT Sequencing] Illumina Genome Analyzer (Citrus trifoliata) (GPL10479) SRA Citrus trifoliata
Citrus trifoliata		 pooled flowers and fruits
24 GSM634227 3-79 fiber_10DPA_rep1 4,863,589 Huazhong Agricultural University 2010-12-02 [HT Sequencing] Illumina Genome Analyzer (Gossypium barbadense) (GPL11270) SRA Gossypium barbadense
Gossypium barbadense		 unclassified source_name:cotton fiber cells title:3-79 fiber_10DPA_rep1
25 GSM712524 Small RNAs from Chara corallina thallus grown under no-phosphate and salt-stressed conditions 4,838,161 University of Delaware 2011-04-20 [HT Sequencing] Illumina Genome Analyzer II (Chara corallina) (GPL13437) SRA Chara corallina
Chara corallina		 pooled Thallus, no phosphate and salt stressed
26 GSM712523 Small RNAs from Chara corallina thallus grown under no-phosphate conditions 4,811,413 University of Delaware 2011-04-20 [HT Sequencing] Illumina Genome Analyzer II (Chara corallina) (GPL13437) SRA Chara corallina
Chara corallina		 pooled Thallus, no phosphate
27 GSM648142 Oryza sativa L. ssp. japonica rdr701-1_LT panicle sRNA 4,621,649 Institute of Genetics and Developmental Biology 2011-01-03 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 other flower/sexual organ young panicles (4cm)
28 GSM280227 xrn4 inflorescence PARE 4,618,158 Delaware Biotechnology Institute 2008-04-08 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ inflorescence whole
29 GSM402423 Wild type 4,453,247 UCLA 2009-05-12 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaves
30 GSM402424 atxr5/atxr6 double mutant 4,428,453 UCLA 2009-05-12 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaves
31 GSM816975 Maize_waterlogging_4h 4,136,457 Cold Spring Harbor Labs 2011-10-14 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays		 root Maize whole root
32 GSM816974 Maize_waterlogging_0h 3,811,363 Cold Spring Harbor Labs 2011-10-14 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays		 root Maize whole root
33 GSM686040 Calli_Differentiated 3,641,248 Institut de Génétique et Microbiologie 2011-03-04 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 unclassified source_name:Differentiated calli title:Calli_Differentiated
34 GSM717572 Small RNAs from Gossypium arboreum fibers 3,501,328 University of Delaware 2011-04-29 [HT Sequencing] Illumina Genome Analyzer II (Gossypium arboreum) (GPL13462) SRA Gossypium arboreum
Gossypium arboreum		 unclassified source_name:Fibers title:Small RNAs from Gossypium arboreum fibers description:Fibers, from bolls 8-11 dpa Total RNA was submitted to Illumina (Hayward, CA, http://www.illumina.com) for small RNA library construction using approaches described in (Lu et al., 2007) with minor modifications. Low molecular weight RNA was gel-sized in the ~18-33 nt range. The small RNA library was sequenced with the Sequencing-by-synthesis (SBS) technology by Illumina.
35 GSM686039 Calli_Undifferentiated 3,499,831 Institut de Génétique et Microbiologie 2011-03-04 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 unclassified source_name:Undifferentiated calli title:Calli_Undifferentiated
36 GSM280226 Wild type inflorescence PARE 3,426,129 Delaware Biotechnology Institute 2008-04-08 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ inflorescence whole
37 GSM516100 RNA-A1 3,425,015 Yellow Sea Fisheries Research Institute (YSFRI), Chinese Academy of Fishery Sciences, Qingdao, 266071, China 2010-02-25 [HT Sequencing] Illumina Genome Analyzer (Porphyra yezoensis) (GPL10109) SRA Porphyra yezoensis
Porphyra yezoensis		 pooled Filamentous sporophytes of Porphyra yezoensis
38 GSM455230 Orange_MT_170DAF 3,416,419 Cornell University 2009-09-22 [HT Sequencing] Illumina Genome Analyzer (Citrus sinensis) (GPL9256) SRA Citrus sinensis
Citrus sinensis		 other seed/fruit/grain fruits
39 GSM712520 Small RNAs from Capsicum annuum flowers 3,408,017 University of Delaware 2011-04-20 [HT Sequencing] Illumina Genome Analyzer II (Capsicum annuum) (GPL13435) SRA Capsicum annuum
Capsicum annuum		 other flower/sexual organ Flowers
40 GSM717571 Small RNAs from Gossypium arboreum flowers 3,403,228 University of Delaware 2011-04-29 [HT Sequencing] Illumina Genome Analyzer II (Gossypium arboreum) (GPL13462) SRA Gossypium arboreum
Gossypium arboreum		 other flower/sexual organ Flowers
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