Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(2,851)

Plants
(464)

Viruses
(0)

Phages
(0)

Unclassified
(120)

All
(6,302)

SAGE NlaIII
(5)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

Other
(0)

All
(464)

brain
(0)

blood
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(23)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(12)

flower/sexual organ
(6)

seed/fruit/grain
(0)

pooled
(76)

unclassified
(347)

all
(464)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
41	GSM34753	PMI40 deletion strain, 0.75 g/L initial mannose, repeat 2/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 0.75 g/L initial mannose, repeat 2/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 0.75 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate 2 of 3.
42	GSM34754	PMI40 deletion strain, 0.75 g/L initial mannose, repeat 3/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 0.75 g/L initial mannose, repeat 3/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 0.75 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate 3 of 3.
43	GSM34755	PMI40 deletion strain, 3 g/L initial mannose, repeat 1/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 3 g/L initial mannose, repeat 1/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 3 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 1 of 3.
44	GSM34756	PMI40 deletion strain, 3 g/L initial mannose, repeat 2/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 3 g/L initial mannose, repeat 2/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 3 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 2 of 3.
45	GSM34757	PMI40 deletion strain, 3 g/L initial mannose, repeat 3/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 3 g/L initial mannose, repeat 3/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 3 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 3 of 3.
46	GSM34758	PMI40 deletion strain, 5 g/L initial mannose, repeat 1/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 5 g/L initial mannose, repeat 1/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 5 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 1 of 3.
47	GSM34759	PMI40 deletion strain, 5 g/L initial mannose, repeat 2/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 5 g/L initial mannose, repeat 2/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 5 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 2 of 3.
48	GSM34760	PMI40 deletion strain, 5 g/L initial mannose, repeat 3/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 5 g/L initial mannose, repeat 3/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 5 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 3 of 3.
49	GSM34761	PMI40 deletion strain, 1.5 g/L initial mannose, repeat 1/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 1.5 g/L initial mannose, repeat 1/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 1.5 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 1 of 3.
50	GSM34762	PMI40 deletion strain, 1.5 g/L initial mannose, repeat 2/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 1.5 g/L initial mannose, repeat 2/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 1.5 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 2 of 3.
51	GSM34763	PMI40 deletion strain, 1.5 g/L initial mannose, repeat 3/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 1.5 g/L initial mannose, repeat 3/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 1.5 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 3 of 3.
52	GSM34764	PMI40 deletion strain, 1 g/L initial mannose, repeat 1/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 1 g/L initial mannose, repeat 1/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 1 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 1 of 3.
53	GSM34765	PMI40 deletion strain, 1 g/L initial mannose, repeat 2/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 1 g/L initial mannose, repeat 2/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 1 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 2 of 3.
54	GSM34766	PMI40 deletion strain, 1 g/L initial mannose, repeat 3/3	9,335	Haartman Institute	2004-11-08	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA from an aerobic batch culture of a pmi40 deletion strain title:PMI40 deletion strain, 1 g/L initial mannose, repeat 3/3 description:A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 1 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 3 of 3.
55	GSM34889	SC5 - Replicate 1	9,335	Biozentrum and Swiss Institute of Bioinformatics	2004-11-10	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA title:SC5 - Replicate 1 description:Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. 4 h after induction of sporulation cells were filtered and immediately re-suspended in pre-chilled medium containing DMSO and continued to grow at 10 degree C. The sample was taken 1 h after filtration. Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint
56	GSM34890	SC5 - Replicate 2	9,335	Biozentrum and Swiss Institute of Bioinformatics	2004-11-10	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA title:SC5 - Replicate 2 description:Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. 4 h after induction of sporulation cells were filtered and immediately re-suspended in pre-chilled medium containing DMSO and continued to grow at 10 degree C. The sample was taken 1 h after filtration. Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint
57	GSM34891	SC8 - Replicate 1	9,335	Biozentrum and Swiss Institute of Bioinformatics	2004-11-10	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA title:SC8 - Replicate 1 description:Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. 4 h after induction of sporulation cells were filtered and immediately re-suspended in pre-chilled medium containing DMSO and continued to grow at 10 degree C. The sample was taken 4 h after filtration. Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint
58	GSM34892	SC8 - Replicate 2	9,335	Biozentrum and Swiss Institute of Bioinformatics	2004-11-10	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Total RNA title:SC8 - Replicate 2 description:Cells were grown to saturation in YPD (YEP + 2% glucose) for 24 hours, diluted into YPA (YEP + 2% potassium acetate) at OD600= 0.3 and grown over night at 30 degree C. Cells were washed with sterilized water the next day and re-suspended in SPO medium (0.3% potassium acetate, pH = 7.0) at OD600= 1.9 at room temperature to induce sporulation. 4 h after induction of sporulation cells were filtered and immediately re-suspended in pre-chilled medium containing DMSO and continued to grow at 10 degree C. The sample was taken 4 h after filtration. Keywords = benomyl sporulation saccharomyces microtubule spindle checkpoint
59	GSM35294	BY haploid-1	9,335	University of Washington	2004-11-13	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Log phase cells title:BY haploid-1 description:BY (strain isogenic to S288C)
60	GSM35295	BY haploid-2	9,335	University of Washington	2004-11-13	[GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90)	RNA	Saccharomyces cerevisiae	unclassified	source_name:Log phase cells title:BY haploid-2 description:BY (strain isogenic to S288C)

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