Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(76)		   SAGE RsaI
(1)		   SAGE Sau3A
(10)		   MPSS
(5)		   GeneChip
(6,053)		   Tiling Array
(284)		   cDNA Array
(717)		   Oligo Array
(2,718)		   Bead Array
(888)		   Protein Array
(0)		   Antibody
(3)		   RT-PCR
(82)		   HT-Seq
(1,149)		   Other
(30)		   All
(12,016)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Endogenous shRNAs, siRNAs, and Other Microprocessor-independent, Dicer-dependent Small RNAs in Mouse ES Cells (GSE12521) [HT Sequencing] Illumina small RNA sequencing (GPL7195) UCSF 2008-08-21 Mus musculus
Mus musculus		 6,470,970
(2,156,990 x 3) 		3 by_platform
by_series
2 Ago-1 and TRIM32-bound small RNAs from E14.5 mouse brain. (GSE12633) [HT Sequencing] IMBA Ago-1 and TRIM32-bound small RNAs from E14.5 mouse brain (454 GS FLX system) (GPL7238) Hubrecht Institute 2008-09-01 Mus musculus
Mus musculus		 473,676
(118,419 x 4) 		4 by_platform
by_series
3 Short RNA profiling of ES cells with and without Dicer (GSE9306) [HT Sequencing] MIT/SharpLab Mouse ES cell 454 2007 (GPL5986) MIT 2007-10-12 Mus musculus
Mus musculus		 313,472
(78,368 x 4) 		4 by_platform
by_series
4 Developmentally regulated piRNA clusters implicate MILI in transposon control (GSE7414) [HT Sequencing] 454 sequencing of small RNAs from mouse (GPL5050) Cold Spring Harbor Laboratory 2007-03-30 Mus musculus
Mus musculus		 136,417
(136,417 x 1) 		1 by_platform
by_series
5 Endogenous shRNAs, siRNAs, and Other Microprocessor-independent, Dicer-dependent Small RNAs in Mouse ES Cells (GSE12521) [HT Sequencing] 454 small RNA sequencing (GPL7196) UCSF 2008-08-21 Mus musculus
Mus musculus		 111,350
(55,675 x 2) 		2 by_platform
by_series
6 High-throughput semi-quantitative analysis of insertional mutations in heterogeneous tumors (GSE22657) [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) Netherlands Cancer Institute 2010-07-01 Mus musculus
Mus musculus		 453
(0 x 453) 		285 9 57 1 101 by_platform
by_series
7 A validated regulatory network for Th17 cell specification (GSE40918) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) New York University 2012-09-17 Mus musculus
Mus musculus		 199
(0 x 199) 		3 196 by_platform
by_series
8 Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals (GSE39860) [HT Sequencing] AB SOLiD 4 System (Mus musculus) (GPL14602) University of Texas Southwestern Medical Center 2012-08-03 Mus musculus
Mus musculus		 136
(0 x 136) 		136 by_platform
by_series
9 Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals [ChIP-seq] (GSE39977) [HT Sequencing] AB SOLiD 4 System (Mus musculus) (GPL14602) University of Texas Southwestern Medical Center 2012-08-08 Mus musculus
Mus musculus		 124
(0 x 124) 		124 by_platform
by_series
10 A high throughput in vivo protein-DNA mapping approach reveals principles of dynamic gene regulation in mammals (ChIP-Seq) (GSE36099) [HT Sequencing] Illumina HiSeq 1000 (Mus musculus) (GPL15103) Broad Institute of MIT and Harvard 2012-02-27 Mus musculus
Mus musculus		 117
(0 x 117) 		117 by_platform
by_series
11 A high throughput in vivo protein-DNA mapping approach reveals principles of dynamic gene regulation in mammals (GSE36104) [HT Sequencing] Illumina HiSeq 1000 (Mus musculus) (GPL15103) Broad Institute of MIT and Harvard 2012-02-27 Mus musculus
Mus musculus		 117
(0 x 117) 		117 by_platform
by_series
12 A validated regulatory network for Th17 cell specification (GSE40918) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) New York University 2012-09-17 Mus musculus
Mus musculus		 108
(0 x 108) 		108 by_platform
by_series
13 Histone Modifications by ChIP-seq from ENCODE/LICR (GSE31039) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) UCSC ENCODE DCC 2011-07-29 Mus musculus
Mus musculus		 105
(0 x 105) 		10 16 4 10 9 9 3 44 by_platform
by_series
14 Characterization of the single-cell (ES and MEF) transcriptional landscape by highly multiplex RNA-Seq (GSE29087) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Karolinska Institutet 2011-05-05 Mus musculus
Mus musculus		 96
(0 x 96) 		44 48 4 by_platform
by_series
15 A draft map of cis-regulatory sequences in the mouse genome (GSE29184) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Ludwig Institute for Cancer Research 2011-05-10 Mus musculus
Mus musculus		 81
(0 x 81) 		11 14 8 14 8 7 8 1 1 8 1 by_platform
by_series
16 A unique regulatory phase of DNA methylation in the early mammalian embryo (GSE34864) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Broad Institute 2012-01-04 Mus musculus
Mus musculus		 76
(0 x 76) 		2 9 1 2 62 by_platform
by_series
17 The B cell identity factor Pax5 regulates distinct transcriptional programs in early and late B lymphopoiesis (GSE38046) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Instutute of Molecular Pathology 2012-05-18 Mus musculus
Mus musculus		 76
(0 x 76) 		2 74 by_platform
by_series
18 A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq] (GSE29218) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Ludwig Institute for Cancer Research 2011-05-11 Mus musculus
Mus musculus		 68
(0 x 68) 		8 12 7 12 7 6 7 1 1 7 by_platform
by_series
19 Latent enhancers unveiled by stimulation expand and adapt the available cis-regulatory repertoire (GSE38379) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) European Institute of Oncology 2012-05-31 Mus musculus
Mus musculus		 67
(0 x 67) 		67 by_platform
by_series
20 Latent enhancers unveiled by stimulation expand and adapt the available cis-regulatory repertoire (ChIP-seq) (GSE38377) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) European Institute of Oncology 2012-05-31 Mus musculus
Mus musculus		 66
(0 x 66) 		66 by_platform
by_series
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