Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(76)
  SAGE RsaI
(1)
  SAGE Sau3A
(10)
  MPSS
(5)
  GeneChip
(7,316)
  Tiling Array
(312)
  cDNA Array
(732)
  Oligo Array
(3,361)
  Bead Array
(1,268)
  Protein Array
(0)
  Antibody
(5)
  RT-PCR
(117)
  HT-Seq
(2,116)
  Other
(45)
  All
(15,364)
 
1   |   2   |   3   |   4   |   5      »      [106]
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Endogenous shRNAs, siRNAs, and Other Microprocessor-independent, Dicer-dependent Small RNAs in Mouse ES Cells (GSE12521) [HT Sequencing] Illumina small RNA sequencing (GPL7195) UCSF 2008-08-21 Mus musculus
Mus musculus
6,470,970
(2,156,990 x 3)
3 by_platform
by_series
2 Ago-1 and TRIM32-bound small RNAs from E14.5 mouse brain. (GSE12633) [HT Sequencing] IMBA Ago-1 and TRIM32-bound small RNAs from E14.5 mouse brain (454 GS FLX system) (GPL7238) Hubrecht Institute 2008-09-01 Mus musculus
Mus musculus
473,676
(118,419 x 4)
4 by_platform
by_series
3 Short RNA profiling of ES cells with and without Dicer (GSE9306) [HT Sequencing] MIT/SharpLab Mouse ES cell 454 2007 (GPL5986) MIT 2007-10-12 Mus musculus
Mus musculus
313,472
(78,368 x 4)
4 by_platform
by_series
4 Developmentally regulated piRNA clusters implicate MILI in transposon control (GSE7414) [HT Sequencing] 454 sequencing of small RNAs from mouse (GPL5050) Cold Spring Harbor Laboratory 2007-03-30 Mus musculus
Mus musculus
136,417
(136,417 x 1)
1 by_platform
by_series
5 Endogenous shRNAs, siRNAs, and Other Microprocessor-independent, Dicer-dependent Small RNAs in Mouse ES Cells (GSE12521) [HT Sequencing] 454 small RNA sequencing (GPL7196) UCSF 2008-08-21 Mus musculus
Mus musculus
111,350
(55,675 x 2)
2 by_platform
by_series
6 High-throughput semi-quantitative analysis of insertional mutations in heterogeneous tumors (GSE22657) [HT Sequencing] 454 GS FLX (Mus musculus) (GPL9273) Netherlands Cancer Institute 2010-07-01 Mus musculus
Mus musculus
453
(0 x 453)
285 9 57 1 101 by_platform
by_series
7 A rat RNA-Seq transcriptomic Bodymap across eleven organs and four developmental stages (GSE53960) [HT Sequencing] Illumina HiSeq 2000 (Rattus norvegicus) (GPL14844) NCTR/FDA 2014-01-09 Rattus norvegicus
Rattus norvegicus
320
(0 x 320)
32 64 32 64 32 32 32 32 by_platform
by_series
8 Single-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cells (GSE45719) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Karolinska Institutet 2013-04-02 Mus musculus
Mus musculus
317
(0 x 317)
10 13 272 22 by_platform
by_series
9 An Integrated and Comparative Encyclopedia of DNA Elements in the Mouse Genome (GSE49847) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) ENCODE DCC 2013-08-13 Mus musculus
Mus musculus
233
(0 x 233)
17 11 4 9 3 9 8 8 2 162 by_platform
by_series
10 Chromatin position effects assayed by thousands of reporters integrated in parallel (GSE48606) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Netherlands Cancer Institute 2013-07-08 Mus musculus
Mus musculus
207
(0 x 207)
207 by_platform
by_series
11 A validated regulatory network for Th17 cell specification (GSE40918) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Solvuu 2012-09-17 Mus musculus
Mus musculus
199
(0 x 199)
3 196 by_platform
by_series
12 An Integrated and Comparative Encyclopedia of DNA Elements in the Mouse Genome (GSE49847) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) ENCODE DCC 2013-08-13 Mus musculus
Mus musculus
195
(0 x 195)
18 22 8 14 11 13 4 105 by_platform
by_series
13 Quantitative single-cell RNA-seq (GSE46980) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Karolinska Institutet 2013-05-15 Mus musculus
Mus musculus
192
(0 x 192)
192 by_platform
by_series
14 Long-range chromatin contacts reveal a role for the pluripotency and Polycomb networks in genome organization (GSE50029) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) UCLA 2013-08-20 Mus musculus
Mus musculus
188
(0 x 188)
35 124 29 by_platform
by_series
15 High throughput quantitative whole transcriptome analysis of distal mouse lung epithelial cells from various developmental stages (E14.5, E16.5, E18.5 and adult) (GSE52583) [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) Stanford University 2013-11-20 Mus musculus
Mus musculus
174
(0 x 174)
174 by_platform
by_series
16 Transcriptome Sequencing of Gene Expression in the brain of HIV transgenic transgenic rat (GSE47474) [HT Sequencing] Illumina HiSeq 2000 (Rattus norvegicus) (GPL14844) University of Virginia 2013-05-29 Rattus norvegicus
Rattus norvegicus
144
(0 x 144)
144 by_platform
by_series
17 Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals (GSE39860) [HT Sequencing] AB SOLiD 4 System (Mus musculus) (GPL14602) University of Texas Southwestern Medical Center 2012-08-03 Mus musculus
Mus musculus
136
(0 x 136)
136 by_platform
by_series
18 Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals [ChIP-seq] (GSE39977) [HT Sequencing] AB SOLiD 4 System (Mus musculus) (GPL14602) University of Texas Southwestern Medical Center 2012-08-08 Mus musculus
Mus musculus
124
(0 x 124)
124 by_platform
by_series
19 A high throughput in vivo protein-DNA mapping approach reveals principles of dynamic gene regulation in mammals (ChIP-Seq) (GSE36099) [HT Sequencing] Illumina HiSeq 1000 (Mus musculus) (GPL15103) Broad Institute of MIT and Harvard 2012-02-27 Mus musculus
Mus musculus
117
(0 x 117)
117 by_platform
by_series
20 A high throughput in vivo protein-DNA mapping approach reveals principles of dynamic gene regulation in mammals (GSE36104) [HT Sequencing] Illumina HiSeq 1000 (Mus musculus) (GPL15103) Broad Institute of MIT and Harvard 2012-02-27 Mus musculus
Mus musculus
117
(0 x 117)
117 by_platform
by_series
1   |   2   |   3   |   4   |   5      »      [106]