Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(6)		   SAGE RsaI
(1)		   SAGE Sau3A
(2)		   MPSS
(4)		   GeneChip
(133)		   Tiling Array
(141)		   cDNA Array
(403)		   Oligo Array
(857)		   Bead Array
(57)		   Protein Array
(0)		   Antibody
(2)		   RT-PCR
(50)		   HT-Seq
(79)		   Other
(13)		   All
(1,748)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
21 GPL529 MWG Rat Liver Array 1,440 MWG Biotech 2003-10-07 MWG Biotech Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, MWG Rat Liver Array, Array containing 1353 oligonucleotide probes representing rat liver genes Including 39 Replicas and 16 Arabidopsis controls. Information Sources: In NCBI/Genbank (keyword: tissue type = liver) only 272 genes had been assigned as liver specific; MWG Biotech has sequenced 1166 genes derived from libraries of liver tissue taken from 12 week old rats of different strains. Therefore, these genes, which are accessible in Genbank, could be assigned to be expressed in rat liver; Additionally, 187 genes sequenced by MWG and identified by protein homology to human or murine sequences are not accessible in Genbank (88 genes are derived from stroke-prone spontaneously hypertensive rats (SHRSP); 65 genes come from normotensive Wistar-Kyoto rats (WKY); 34 genes can be found in both strains).
22 GPL870 NIA Mouse 22K Microarray v1.0 (Development 60-mer Oligo) 22,575 NIH 2003-12-30 Agilent Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, NIA Mouse 22K Microarray v1.0 (Development 60-mer Oligo), NIA Mouse 22K Microarray v1.0 contains 21,939 60-mer oligonucleotides representing sequences derived from the NIA/NIH early mouse embryo cDNA clone set. The annotation information is based on the NIA Mouse Gene Index 4.0 http://lgsun.grc.nia.nih.gov/geneindex4, which combines genome assembly sequences from public databases (RefSeq, Ensembl, Riken), and the NIA collection of public EST libraries derived from stem cells and early stage of mouse embryos, along with human-curated genetic databases to form structure models of over 40,000 genetic loci4.
23 GPL890 Agilent-011868 Rat Oligo Microarray G4130A (Feature Number version) 22,575 Agilent Technologies 2004-01-02 Agilent Technologies Rattus norvegicus
Rattus norvegicus		 Oligo Array in situ oligonucleotide, Agilent-011868 Rat Oligo Microarray G4130A (Feature Number version), This microarray contains representative sequences derived from rat RefSeq, high-quality public rat mRNA accessions, homologs to human and mouse RefSeq, EST clusters determined by a leading biopharmaceutical company and the Incyte Zooseq database as well as toxicology markers determined by the National Institute of Environmental Health Sciences (NIEHS) and others. Many of the toxicology markers used in the design of this microarray were released to the public domain for the first time and will be used on this unique microarray product. Arrays of this design have barcodes that begin with 16011868 or 2511868. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7267.
24 GPL891 Agilent-011978 Mouse Microarray G4121A (Feature Number version) 22,575 Agilent Technologies 2004-01-02 Agilent Technologies Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent-011978 Mouse Microarray G4121A (Feature Number version), Mouse is the most widely used mammalian model in biological research and target identification. This microarray will enable researchers to simultaneously characterize expression activities of many thousands of mouse genes associated with various biological functions and processes. Content for this empirically validated microarray includes a comprehensive set of toxicology markers determined through collaboration with leaders in toxicogenomics including NIEHS, Toxicogenomics Research Consortium, and Paradigm Genetics Arrays of this design have barcodes that begin with 16011978 or 2511978. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL6466.
25 GPL922 Agilent-011472 Mouse Development Oligo Microarray G4120A (Feature Number version) 22,575 Agilent Technologies 2004-01-07 Agilent Technologies Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent-011472 Mouse Development Oligo Microarray G4120A (Feature Number version), The content on this microarray was derived from the National Institute on Aging/National Institute of Health cDNA mouse clone set that includes genes from sequences of stem cells and very early-stage embryo cDNA libraries. Arrays of this design have barcodes that begin with 16011472 or 2511472. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7269.
26 GPL929 UCSF 7Mm version 2 mouse long oligo array 16,486 University of California, San Francisco 2004-01-13 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, UCSF 7Mm version 2 mouse long oligo array, Spotted long oligonucleotide array on glass. Keywords = spotted Keywords = long oligonucleotide
27 GPL958 RAT oligo Gal 02.gal 4,952 New Jersey Medical School-UMDNJ 2004-01-20 Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, RAT oligo Gal 02.gal, Rat 5K gene array I. Array Design Description In this study, a commercially available 5000 rat oligonucleotide array (CAG, ICPH, Newark, NJ) was employed. Please refer to the websites www.cag.icph.org and www.ngelab.org about the detailed array design elements. The following information was required by the MGED: 1. Array related information: array design name: Rat 5K Oligo Array (NGEL 2.01); platform type: spotted; surface and coating specification: flat, silicon coating; physical dimensions of array support: glass slide; number of features on the array: about 5000; availability: commercial arrays. 2. a) For each reporter type: single stranded synthetic 60-70 base oligo- nuceotides. b) For each reporter: sequence, lengths, and element generation protocol information: please require from manufacturer or refer to its website. 3. a) For each feature type: dimensions. b) For each feature: refer to the manufacturer's website. 4. For each composite sequence: refer to the manufacturer's website. 5. Control elements on the array: position of the feature: refer to the manufacturer's website; control type: negative and positive; control qualifier: endogenous. The Neuroscience Gene Expression Laboratory (NGEL) 2.01 Rat Oligo arrays were purchased from the Center for Applied Genomics (CAG), International Center for Public Health (ICPH), Newark, NJ. The arrays are mainly built from two groups of oligonucleotides: the complete Compugen C-GEN Rat library (4,854 oligos representing 4,803 independent genes and over 9,225 independent mRNAs) and a custom-designed set based on suggestions from our collaborators (approximately 120 oligos). The total gene number is about 5000, so it is also called 5 k rat oligo array. All oligos are 60-70 nt, and are 5' amine linked to aldehyde modified slides. The array also contains a number of custom-designed controls, including random sequence negative probe, random sequence matching a Cy3-labeled complement positive control, common rat pathogen sequences, green fluorescent protein gene probe and a scale of 8:1 to 1:8 molar ratios of Genisphere capture sequences. This array contains the Compugen C-GEN Rat library, as well as over 100 custom-synthesized rat probes.
28 GPL968 RAT_6K_OligoArray 13,056 Institute of Surgical Research 2004-01-29 Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, RAT_6K_OligoArray, Spotted 70mer oligonucleotide The Rat Genome Oligo Set Version 1.1 (Qiagen) contains 5,705 70mer probes representing 5,677 Rattus norvegicus genes plus 24 controls oligonucleotides. The oligo set represents most cloned rat genes and some expressed sequence tags (ESTs). All probes are designed from the UniGene Database Build Rn 90(Version 1.0), UniGene Database Build Rn 108 (Upgrade), and the Rat RefSeq database, developed and maintained at the National Center of Biotechnology Information (NCBI). Keywords = spotted Keywords = 70mer oligonucleotide
29 GPL979 NIAID - Mmac 14,208 National Institute of Allergy and Infectious Diseases 2004-02-09 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, NIAID - Mmac, Printing by NIAID / Microarray Research Facility Surface type: non-adsorptive, polylysine-coated glass Attachment: covalent, (UV-treated polylysine) Array description: The custom microarrays are manufactured by the Microarray Research Facility of the National Institute of Allergy and Infectious Diseases (NIH/NIAID). Microarrays are printed with an Omnigrid robotic arrayer by Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead and 32 SMP3 print tips from Telechem (http://www.arrayit.com ). The mouse microarray (Mmac) probe set is based on 70mer oligonucleotides from Qiagen's Mouse Genome Oligo Set V1.1 (http://oligos.qiagen.com/arrays/omad.php ). A comprehensive gene list is also available at http://madb.niaid.nih.gov Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in 4XSSC print buffer at a normalized 25 micromolar concentration. The Mmac microarray spot densities are 190 microns (center-to-center). The microarrays are printed on Fisher Premium microscope slides (cat# 12-544-1) coated with poly-L-lysine and post-processed according to the procedures on the Stanford website: http://cmgm.stanford.edu/pbrown/protocols/index.html .
30 GPL985 Operon Long Oligo, V1 32,448 U.T. Southwestern Medical Center 2004-02-11 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Operon Long Oligo, V1, Operon long oligo set
31 GPL987 OMM13K 13,824 Yale University School of Medicine 2004-02-12 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, OMM13K, Mouse OMM13K cDNA array is created from a set of 13K Operon 70 mer oligos. The array is in 32 pin conformation. It has 24 columns and 18 rows in each of 4 x 8 subarrays.
32 GPL991 ORR4.8K 10,000 Yale University School of Medicine 2004-02-12 Rattus norvegicus
Rattus norvegicus		 Oligo Array spotted oligonucleotide, ORR4.8K, Rat ORR4.8K array is from a set of 4.8K Compugen 65 mer oligos. Each oligo has two replicate spots. The array has 25 col x 25 rows in each of 4 x 4 subarrays. There are two arrays on each slide.
33 GPL1006 Mouse 13.4K long oligonucleotide array (Operon) 13,872 Lund University 2004-02-20 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Mouse 13.4K long oligonucleotide array (Operon), The Operon version 1.1 oligonucleotide probe set (70-mers) was printed in the Massachusetts General Hospital microarray core facility using an OmniGrid 100 (GeneMachines) on CodeLink activated slides (Amersham). Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine. Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber. Unreacted groups on the slide surface were blocked with 150 mM glycine, 0.1 M tris, 0.1% N-lauroyl sarcosine, pH 9. Keywords = spotted, long oligonucleotide, Operon
34 GPL1058 NIAID - Mmbf 18,816 National Institute of Allergy and Infectious Diseases 2004-03-01 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, NIAID - Mmbf, Printing by NIAID / Microarray Research Facility Surface type: non-adsorptive, epoxy-coated glass Attachment: covalent Array description: The custom microarrays are manufactured by the Microarray Research Facility of the National Institute of Allergy and Infectious Diseases (NIH/NIAID). Microarrays are printed with an Omnigrid robotic arrayer by Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead and 48 SMP3 print tips from Telechem (http://www.arrayit.com ). The mouse microarray (Mmbf) probe set is based on 70mer oligonucleotides from Qiagen's Mouse Genome Oligo Set V2.0 (http://oligos.qiagen.com/arrays/omad.php ). A comprehensive gene list is also available at http://madb.niaid.nih.gov/ Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved to a normalized 25 micromolar concentration in print buffer (150mM sodium phosphate, pH 8.5, 4% sodium sulfate, 0.0001% N-lauroylsarcosine). The Mmbf microarray spot densities are 210 microns (center-to-center). The microarrays are printed on MWG Epoxy Slides (MWG Biotech Inc., # 1150-000000) and treated by a method that is an adaptation of the manufacturer's instructions to allow higher throughput processing.
35 GPL1056 NIAID - Mmbb 17,664 National Institute of Allergy and Infectious Diseases 2004-03-01 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, NIAID - Mmbb, Printing by NIAID / Microarray Research Facility Surface type: non-adsorptive, epoxy-coated glass Attachment: covalent Array description: The custom microarrays are manufactured by the Microarray Research Facility of the National Institute of Allergy and Infectious Diseases (NIH/NIAID). Microarrays are printed with an Omnigrid robotic arrayer by Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead and 32 SMP3 print tips from Telechem (http://www.arrayit.com ). The mouse microarray (Mmbb) probe set is based on 70mer oligonucleotides from Qiagen's Mouse Genome Oligo Set V2.0 (http://oligos.qiagen.com/arrays/omad.php ). A comprehensive gene list is also available at http://madb.niaid.nih.gov/ Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved to a normalized 25 micromolar concentration in print buffer (150mM sodium phosphate, pH 8.5, 4% sodium sulfate, 0.0001% N-lauroylsarcosine). The Mmbb microarray spot densities are 180 microns (center-to-center). The microarrays are printed on MWG Epoxy Slides (MWG Biotech Inc., # 1150-000000) and treated by a method that is an adaptation of the manufacturer's instructions to allow higher throughput processing.
36 GPL1057 NIAID - Mmbe 17,664 National Institute of Allergy and Infectious Diseases 2004-03-01 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, NIAID - Mmbe, Printing by NIAID / Microarray Research Facility Surface type: non-adsorptive, epoxy-coated glass Attachment: covalent Array description: The custom microarrays are manufactured by the Microarray Research Facility of the National Institute of Allergy and Infectious Diseases (NIH/NIAID). Microarrays are printed with an Omnigrid robotic arrayer by Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead and 48 SMP3 print tips from Telechem (http://www.arrayit.com ). The mouse microarray (Mmbe) probe set is based on 70mer oligonucleotides from Qiagen's Mouse Genome Oligo Set V2.0 (http://oligos.qiagen.com/arrays/omad.php ). A comprehensive gene list is also available at http://madb.niaid.nih.gov/ Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved to a normalized 25 micromolar concentration in print buffer (150mM sodium phosphate, pH 8.5, 4% sodium sulfate, 0.0001% N-lauroylsarcosine). The Mmbe microarray spot densities are 210 microns (center-to-center). The microarrays are printed on MWG Epoxy Slides (MWG Biotech Inc., # 1150-000000) and treated by a method that is an adaptation of the manufacturer's instructions to allow higher throughput processing.
37 GPL1072 Agilent Mouse mucosal/immuno 8,014 Max-Planck Institute for Infection Biology 2004-03-16 Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Agilent Mouse mucosal/immuno, Oligonucleotide array printed with 8015 unique 60-mer oligos derived from Unigene clusters (Unigene Build#148). Array is a custom design developed at the Max-Planck Institute for Infection Biology, in Berlin, Germany. Genes were selected to preferentially represent those expressed in the gut (intestine, stomach), lung and immune system.
38 GPL1089 UCSF 10Mm Mouse v.2 Oligo Array 19,152 University of California, San Francisco 2004-04-02 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, UCSF 10Mm Mouse v.2 Oligo Array, Spotted long oligonucleotide array on glass. Keywords = spotted, long oligonucleotide
39 GPL1196 UCSF Gladstone 18K Mouse v.2 Oligo Array 18,240 University of California, San Francisco 2004-04-09 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, UCSF Gladstone 18K Mouse v.2 Oligo Array, Spotted long oligonucleotide array on glass. Keywords = spotted, long oligonucleotide
40 GPL1201 EPA mouse gal V3 18,432 U.S. EPA 2004-04-21 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, EPA mouse gal V3, Probes were from an Array-Ready Oligo set for the mouse genome version 2 (Qiagen Operon, Valencia CA) consisting of 16,423 70mer oligonucleotide probes, 24 positive and negative controls and additional in house derived specific probes. Total number of probes= 17,388.
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