Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(1)
  SAGE Sau3A
(2)
  MPSS
(4)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(928)
  Bead Array
(63)
  Protein Array
(0)
  Antibody
(4)
  RT-PCR
(68)
  HT-Seq
(0)
  Other
(20)
  All
(1,907)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
81 GPL2038 PBRC Mouse Oligo_M6+ series (Operon 19K) 19,200 Pennington Biomedical Research Center 2005-05-11 Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, PBRC Mouse Oligo_M6+ series (Operon 19K), Mouse Oligonucleotide (70 mer) probes designed and manufactured by Operon (mouse library version 2.0, QIAGEN Operon, Inc., Alameda, CA) were solubilized in 45% DMSO and printed onto poly-L-lysine slides. This library contains 19,200 oligos representing 17,280 unique genes. Slides were printed using a Genomic Solutions (Gene Machine) OmniGrid equipped with Telechem SMP4 Stealth Micro Spotting pins by the Genomics Core Facility at the Pennington Biomedical Research Center. Additional information concerning gene specifics can be located on the Operon website (http://omad.operon.com/mouse2/index.php) Keywords = mouse 19K oligonucleotide
82 GPL2037 PBRC Mouse Oligo_M5 series (Operon 16K) 15,552 Pennington Biomedical Research Center 2005-05-11 Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, PBRC Mouse Oligo_M5 series (Operon 16K), Mouse Oligonucleotide (70 mer) probes designed and manufactured by Operon (mouse library version 1.1, QIAGEN Operon, Inc., Alameda, CA) were solubilized in 45% DMSO and printed onto poly-L-lysine slides. This library contains 15,552 oligos representing 13,443 unique genes. Slides were printed using a Genomic Solutions (Gene Machine) OmniGrid equipped with Telechem SMP4 Stealth Micro Spotting pins by the Genomics Core Facility at the Pennington Biomedical Research Center. Additional information concerning gene specifics can be located on the Operon website (http://omad.operon.com/mouse/index.php) Keywords = mouse 16K oligonucleotide
83 GPL2050 Rosetta/Merck Rat 25k v1.2 microarray 23,574 Rosetta Inpharmatics / Merck Pharmaceuticals 2005-05-16 Rosetta Inpharmatics / Merck Pharmaceuticals Rattus norvegicus
Rattus norvegicus
Oligo Array in situ oligonucleotide, Rosetta/Merck Rat 25k v1.2 microarray, Oligonucleotide array on glass. Contains 60-mer probes (60-mer). Keywords = Rat 25k microarray Merck
84 GPL2125 Sigma Mouse oligo set I LGTC 16,416 Leiden University Medical Center 2005-05-25 Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Sigma Mouse oligo set I LGTC, 7.5 K sigma mouse oligo set I printed in duplicate
85 GPL2127 Sigma Mouse oligo set II LGTC 15,552 Leiden University Medical Center 2005-05-25 Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Sigma Mouse oligo set II LGTC, 15 K sigma mouse extension oligo set II
86 GPL2510 Rosetta/Merck (C57BL/6J X C3H/HeJ)F2 on ApoE null backgrounds 75K oligio array 1 23,574 UCLA 2005-06-04 Agilent Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Rosetta/Merck (C57BL/6J X C3H/HeJ)F2 on ApoE null backgrounds 75K oligio array 1, Oligonucleotide array on glass. Contains 60mer probes designed against 23,000+ mouse genes arrayed on Agilent ink-jet arrays. Keywords=mouse genetics gene expression oligonucleotide
87 GPL2551 NIA Mouse 44K Microarray v2.0 (Whole Genome 60-mer Oligo) 44,290 NIH 2005-06-16 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NIA Mouse 44K Microarray v2.0 (Whole Genome 60-mer Oligo), The Agilent's Mouse Development Oligo Microarray 44K is formatted on a 1x3 inch (25mm x 75mm) glass slide. Each 44,290-feature microarray contains 42,291 (60-mer) probes representing all empirical and predicted mouse genes and transcripts from the NIA Mouse Gene Index. The sequence and associated annotation information is based on the NIA Mouse Gene Index 4.0 http://lgsun.grc.nia.nih.gov/geneindex4, which combines genome assembly sequences from public databases (RefSeq, Ensembl, Riken), and the NIA collection of public EST libraries derived from stem cells and early stage of mouse embryos, along with human-curated genetic databases to form structure models of over 40,000 genetic loci4. Furthermore, a set of synthetic spike-in control probes are included to control variations in target labeling and hybridization, and to provide more quantitative information on transcripts5.
88 GPL2550 NIA Mouse 44K Microarray v1.0 (Development-Toxicology 60-mer Oligo) 44,176 NIH 2005-06-16 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NIA Mouse 44K Microarray v1.0 (Development-Toxicology 60-mer Oligo), NIA Mouse 44K Microarray v1.0 combines two 22K Agilent arrays: "NIA Mouse 22K Microarray v2.0 (Development 60-mer Oligo)" and "Agilent Mouse Oligo Microarray (G4121A)" into one 44K chip. 44K array is formatted on a 1x3 inch (25mm x 75mm) glass slide. Each 44,176-feature microarray contains 41,920 (60-mer) probes representing empirical and predicted mouse genes and transcripts. The annotation information is based on the NIA Mouse Gene Index 4.0 http://lgsun.grc.nia.nih.gov/geneindex4, which combines genome assembly sequences from public databases (RefSeq, Ensembl, Riken), and the NIA collection of public EST libraries derived from stem cells and early stage of mouse embryos, along with human-curated genetic databases to form structure models of over 40,000 genetic loci4.
89 GPL2552 NIA Mouse 44K Microarray v2.1 (Whole Genome 60-mer Oligo) 43,430 NIH 2005-06-16 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NIA Mouse 44K Microarray v2.1 (Whole Genome 60-mer Oligo), The Agilent's Mouse Development Oligo Microarray 44K is formatted on a 1x3 inch (25mm x 75mm) glass slide. Each 44,290-feature microarray contains 41,034 (60-mer) probes representing all empirical and predicted mouse genes and transcripts from the NIA Mouse Gene Index. The sequence and associated annotation information is based on the NIA Mouse Gene Index 4.0 http://lgsun.grc.nia.nih.gov/geneindex4, which combines genome assembly sequences from public databases (RefSeq, Ensembl, Riken), and the NIA collection of public EST libraries derived from stem cells and early stage of mouse embryos, along with human-curated genetic databases to form structure models of over 40,000 genetic loci4. Furthermore, a set of synthetic spike-in control probes are included to control variations in target labeling and hybridization, and to provide more quantitative information on transcripts5.
90 GPL2549 NIA Mouse 22K Microarray v2.0 (Development 60-mer Oligo) 22,132 NIH 2005-06-16 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, NIA Mouse 22K Microarray v2.0 (Development 60-mer Oligo), NIA Mouse 22K Microarray v2.0 contains 21,052 60-mer oligonucleotides representing over 20,000 known and predicted mouse genes. The sequence annotation information is based on the NIA Mouse Gene Index 4.0 http://lgsun.grc.nia.nih.gov/geneindex4, which combines genome assembly sequences from public databases (RefSeq, Ensembl, Riken), and the NIA collection of public EST libraries derived from stem cells and early stage of mouse embryos, along with human-curated genetic databases to form structure models of over 40,000 genetic loci4.
91 GPL2584 FJL Mouse Compugen 22K Oligo 22,006 MRC Functional Genomics Unit, University of Oxford 2005-06-29 FJL Laboratory Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, FJL Mouse Compugen 22K Oligo, Slides are Codelink
92 GPL2594 INSERM Rat Operon Pronto plus Systems 6 Oligoarray 28,800 INSERM U858 2005-07-04 platform Biopuces, Toulouse Genopole Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, INSERM Rat Operon Pronto plus Systems 6 Oligoarray, Deposition on each glass slide of the cDNA from one lean with one obese SHHF rats
93 GPL2612 Mouse Compugen oligo array 23,040 Tessarae, LLC 2005-07-08 unknown Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Mouse Compugen oligo array,
94 GPL2623 Qiagen/Operon version 2.0 mouse oligonucleotide 16,463 Harvard University 2005-07-12 - Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Qiagen/Operon version 2.0 mouse oligonucleotide,
95 GPL2640 Mouse Genomic Long Oligo Array (AECOM) 33,600 University of California, San Diego, School of Medicine 2005-07-18 Microarray Core Facility of Albert Einstein College of Medicine Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Mouse Genomic Long Oligo Array (AECOM),
96 GPL2660 UCSF 12Mm Mouse v.2 Oligo Array 18,144 University of California, San Francisco 2005-07-21 UCSF Functional Genomics Core Facility Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, UCSF 12Mm Mouse v.2 Oligo Array, Spotted long oligonucleotide array on glass.
97 GPL2707 Mouse Exons 837,251 University of Toronto 2005-07-31 Agilent Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Mouse Exons,
98 GPL1439 Rat Oligonucleotide expression array 21,575 UCLA 2005-08-05 Agilent Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, Rat Oligonucleotide expression array, Agilent Rat Parietal cell Oligonucleotide Expression Microarray G4130A
99 GPL2774 Amersham Biosciences CodeLink Uniset Rat I Bioarray 9,911 NIH 2005-08-23 Motorola/Amersham/GE Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, Amersham Biosciences CodeLink Uniset Rat I Bioarray, ~10 000 rat genes, one specific, prescreened 30-mer probe per gene, functionally validated
100 GPL2796 Hypertensive Study 6,720 The Institute for Genomic Research 2005-08-27 TIGR Rattus norvegicus
Rattus norvegicus
Oligo Array spotted oligonucleotide, Hypertensive Study,
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