Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,625)		   Primates
(206)		   Rodents
(12,612)		   Mammals
(782)		   Vertebrates
(1,156)		   Invertebrates
(4,045)		   Plants
(6,642)		   Bacteria
(2,980)		   Viruses
(50)		   Phages
(4)		   Unclassified
(287)		   All
(47,440)		  
  SAGE NlaIII
(76)		   SAGE RsaI
(1)		   SAGE Sau3A
(10)		   MPSS
(5)		   GeneChip
(6,310)		   Tiling Array
(290)		   cDNA Array
(724)		   Oligo Array
(2,856)		   Bead Array
(929)		   Protein Array
(0)		   Antibody
(4)		   RT-PCR
(92)		   HT-Seq
(1,285)		   Other
(30)		   All
(12,612)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
21 Global transcriptional activity in pluripotent embryonic stem cells. (GSE10834) [Tiling Array] Affymetrix non-commercial Mouse Tiling 1.0 Array 16 (GPL6628) Affymetrix, Inc. 2008-03-14 Mus musculus
Mus musculus		 55,759,416
(13,939,854 x 4) 		4 by_platform
by_series
22 Profiling of copy-number variation between DNA isolation from different tissues of BN and ACI rats (GSE45308) [Oligo Array] Hubrecht Rat 2.1M HX1 (GPL9991) Hubrecht Institute 2013-03-19 Rattus norvegicus
Rattus norvegicus		 51,410,304
(2,142,096 x 24) 		24 by_platform
by_series
23 Renal gene expression analysis: exon-level data (GSE12671) [GeneChip] [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [probe set (exon) version] (GPL6194) University of Edinburgh 2008-09-04 Rattus norvegicus
Rattus norvegicus		 51,115,248
(1,064,901 x 48) 		12 36 by_platform
by_series
24 Renal gene expression analysis of rat malignant hypertensive end-organ damage (GSE12672) [GeneChip] [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [probe set (exon) version] (GPL6194) University of Edinburgh 2008-09-04 Rattus norvegicus
Rattus norvegicus		 51,115,248
(1,064,901 x 48) 		12 36 by_platform
by_series
25 Sense and antisense exon profiling across human, mouse, and rat (GSE41409) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) South Dakota State University 2012-10-09 Mus musculus
Mus musculus		 50,273,240
(1,256,831 x 40) 		4 8 8 4 4 4 4 4 by_platform
by_series
26 Doxorubicin enhances nucleosome turnover around promoters (GSE43753) [Tiling Array] NimbleGen Mouse 2.1M tiling (MM9_Deluxe_Prom_ChIP_HX1) (GPL16533) Fred Hutchinson Cancer Research Center 2013-01-25 Mus musculus
Mus musculus		 49,987,440
(2,082,810 x 24) 		24 by_platform
by_series
27 The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells (GSE10656) [Oligo Array] NimbleGen Mouse 2.1M NCBI36 (GPL6436) Children's Hospital, Boston 2008-02-27 Mus musculus
Mus musculus		 42,997,740
(2,149,887 x 20) 		1 19 by_platform
by_series
28 Sense and antisense exon profiling across human, mouse, and rat (GSE41409) [GeneChip] [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [probe set (exon) version] (GPL6194) South Dakota State University 2012-10-09 Rattus norvegicus
Rattus norvegicus		 42,596,040
(1,064,901 x 40) 		4 8 8 4 4 4 4 4 by_platform
by_series
29 IP of 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC) enriched DNA fragments from control and PB treated mouse livers (GSE40540) [Oligo Array] NimbleGen Mouse 2.1M deluxe promoter array (GPL14890) Medical Research Council 2012-08-31 Mus musculus
Mus musculus		 41,126,600
(2,056,330 x 20) 		20 by_platform
by_series
30 DNA methylation data from mouse iPS cells, ES cells, and ntES cells (GSE22851) [Oligo Array] NimbleGen Mouse 2.1M array [100512_MM8_CHARM_HX1] (GPL10683) Johns Hopkins University School of Medicine 2010-07-09 Mus musculus
Mus musculus		 36,676,310
(2,157,430 x 17) 		4 4 9 by_platform
by_series
31 RNA degradation in proliferating and differentiated C2C12 muscle precursor cells analyzed on Affymetrix exon arrays (GSE14387) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) Leiden University Medical Center 2009-01-12 Mus musculus
Mus musculus		 35,191,268
(1,256,831 x 28) 		28 by_platform
by_series
32 Dissecting Gene Expression Networks in Mammalian Organogenesis (MORGEN) (GSE8420) [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) Canada's Michael Smith Genome Sciences Centre 2007-07-09 Mus musculus
Mus musculus		 34,686,064
(2,477,576 x 14) 		6 6 2 by_platform
by_series
33 Expression profiles of primary motor neurons after knocking down Fus (GSE42421) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) Nagoya University School of Medicine 2012-11-20 Mus musculus
Mus musculus		 33,934,437
(1,256,831 x 27) 		27 by_platform
by_series
34 aCGH data from mouse APL tumors (GSE26130) [Tiling Array] NimbleGen Mouse CGH Whole-Genome Tiling Array [080411_MM9_CGH_HX1] (GPL11368) Washington University in St.Louis 2010-12-16 Mus musculus
Mus musculus		 33,447,520
(2,090,470 x 16) 		16 by_platform
by_series
35 Conserved progression mutations revealed by sequencing a mouse acute promyelocytic leukemia genome (GSE26131) [Tiling Array] NimbleGen Mouse CGH Whole-Genome Tiling Array [080411_MM9_CGH_HX1] (GPL11368) Washington University in St.Louis 2010-12-16 Mus musculus
Mus musculus		 33,447,520
(2,090,470 x 16) 		16 by_platform
by_series
36 26 mouse ES EB samples affymetrix exon array (affymetrix exon array) (GSE27397) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) university of chicago 2011-02-17 Mus musculus
Mus musculus		 32,677,606
(1,256,831 x 26) 		26 by_platform
by_series
37 CAST/EiJ x C57BL/6J cross data (GSE16227) [Oligo Array] Rosetta/Merck Mouse 25k_v3 (GPL8591) Best Institute 2009-05-26 Mus musculus
Mus musculus		 31,434,837
(23,653 x 1,329) 		443 443 443 by_platform
by_series
38 Exon analysis of HCV tumor promoting effect (GSE12184) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) Bar Ilan University 2008-07-21 Mus musculus
Mus musculus		 31,420,775
(1,256,831 x 25) 		19 6 by_platform
by_series
39 HCV tumor promoting effect is dependent on host genetic background (GSE12185) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) Bar Ilan University 2008-07-21 Mus musculus
Mus musculus		 31,420,775
(1,256,831 x 25) 		19 6 by_platform
by_series
40 Alternative splicing is frequent during early embryonic development in mouse (GSE21971) [GeneChip] [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] (GPL6193) McGill University 2010-05-24 Mus musculus
Mus musculus		 31,420,775
(1,256,831 x 25) 		10 15 by_platform
by_series
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