Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2)
  Primates
(0)
  Rodents
(127)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(20)
  Bacteria
(24)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(233)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(4)
  Tiling Array
(0)
  cDNA Array
(54)
  Oligo Array
(65)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(127)
 
  brain
(12)
  blood
(6)
  connective
(7)
  reproductive
(7)
  muscular
(0)
  digestive
(0)
  liver
(2)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(6)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(54)
  unclassified
(7)
  all
(127)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
61 GSM37453 CD1 strain intestine 21,882 University of Toronto 2004-12-09 [Oligo Array] Agilent Custom Mouse Alternative Splicing Oligo Microarray (GPL1738) RNA Mus musculus
Mus musculus
intestine Pooled mouse CD1 strain intestine
62 GSM37454 CD1 strain kidney 21,882 University of Toronto 2004-12-09 [Oligo Array] Agilent Custom Mouse Alternative Splicing Oligo Microarray (GPL1738) RNA Mus musculus
Mus musculus
kidney Pooled mouse CD1 strain kidney
63 GSM37455 CD1 strain liver 21,882 University of Toronto 2004-12-09 [Oligo Array] Agilent Custom Mouse Alternative Splicing Oligo Microarray (GPL1738) RNA Mus musculus
Mus musculus
liver/hepato Pooled mouse CD1 strain liver
64 GSM37456 CD1 strain lung 21,882 University of Toronto 2004-12-09 [Oligo Array] Agilent Custom Mouse Alternative Splicing Oligo Microarray (GPL1738) RNA Mus musculus
Mus musculus
lung Pooled mouse CD1 strain lung
65 GSM37457 CD1 strain muscle 21,882 University of Toronto 2004-12-09 [Oligo Array] Agilent Custom Mouse Alternative Splicing Oligo Microarray (GPL1738) RNA Mus musculus
Mus musculus
muscle Pooled mouse CD1 strain muscle
66 GSM37458 CD1 strain salivary 21,882 University of Toronto 2004-12-09 [Oligo Array] Agilent Custom Mouse Alternative Splicing Oligo Microarray (GPL1738) RNA Mus musculus
Mus musculus
salivary Pooled mouse CD1 strain salivary
67 GSM37459 CD1 strain spleen 21,882 University of Toronto 2004-12-09 [Oligo Array] Agilent Custom Mouse Alternative Splicing Oligo Microarray (GPL1738) RNA Mus musculus
Mus musculus
spleen Pooled mouse CD1 strain spleen
68 GSM37460 CD1 strain testis 21,882 University of Toronto 2004-12-09 [Oligo Array] Agilent Custom Mouse Alternative Splicing Oligo Microarray (GPL1738) RNA Mus musculus
Mus musculus
testis Pooled mouse CD1 strain testis
69 GSM38112 SAGE of skeletal muscle of intact mice 18,383 Laval University Hospital Center Research Center 2004-12-23 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
muscle skeletal muscle (gastrocnemius)
70 GSM38111 skeletal muscle of adrenalectomized mice 24h after an injection of glucocorticoids 12,488 Laval University Hospital Center Research Center 2004-12-23 [GeneChip] [MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array (GPL81) RNA Mus musculus
Mus musculus
muscle skeletal muscle (gastrocnemius)
71 GSM38209 skeletal muscle of intact mice 12,488 Laval University Hospital Center Research Center 2004-12-27 [GeneChip] [MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array (GPL81) RNA Mus musculus
Mus musculus
muscle skeletal muscle (gastrocnemius)
72 GSM38210 skeletal muscle of adrenalectomized mice 12,488 Laval University Hospital Center Research Center 2004-12-27 [GeneChip] [MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array (GPL81) RNA Mus musculus
Mus musculus
muscle skeletal muscle (gastrocnemius)
73 GSM38211 skeletal muscle of adrenalectomized mice 3h after an injection of glucocorticoids 12,468 Laval University Hospital Center Research Center 2004-12-27 [GeneChip] [MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array (GPL81) RNA Mus musculus
Mus musculus
muscle skeletal muscle (gastrocnemius)
74 GSM31975 ME7-21dpi-1 11,136 Canadian Science Centre for Human and Animal Health 2004-10-10 [cDNA Array] BMAP_HGPD (GPL1487) RNA Mus musculus
Mus musculus
pooled C57BL/6 mice were inoculated intracerebrally with 20 µl of 1% brain homogenate which was obtained from the TSE Resource Centre, Institute for Animal Health, Compton, UK. Mock-infected control mice were inoculated intra-cerebrally with 20 µl of PBS. The brains were removed at the appropriate time-points and stored at -80 C in RNALater (Ambion) until all experimental time points were completed. Total RNA was isolated from the stored tissue samples by homogenization in Trizol reagent (Invitrogen). RNA was further purified using RNeasy columns (Qiagen) according to the manufacturers instructions. 10 µg of total RNA as a template for oligo -dT primed reverse transcription and incorporated amino allyl -dUTP (Sigma) into the cDNA, essentially following the Institute for Genomic Research, Rockville, MD, USA (TIGR) published protocol http://pga.tigr.org/sop/M004_1a.pdf The remaining RNA template was hydrolysed and the cDNA product purified using the QIAquick PCR purification system (Qiagen). cDNA was dried down, then resuspended in 0.1 M Na2CO3, pH9.0 buffer, and incubated for 1 hour in either an Alexa Fluor555 (AF555) or Alexa Fluor647(AF647) mono-functional reactive dye (Molecular Probes) made up in DMSO. Labelled cDNA was also purified using QIAquick PCR purification columns. Labelled cDNA was dried down and resuspended in 60 µl DIG Easy Hyb hybridisation buffer (Roche) containing calf thymus DNA (Sigma) and yeast tRNA (Life Technologies). The labelled cDNAs were applied to arrays under M Series Lifter Slips (Erie Scientific Company) and the slides incubated in a hybridisation chamber at 42oC for 16 hours. Following hybridisation lifter slips were removed and the arrays washed a total of 3 times for 5 minutes first in1 X SSC, 0.2% SDS, and then 3 times for 5 minutes in 0.1 X SSC, 0.2% SDS pre-warmed to 42°C. A final wash in 0.1 X SSC at room temperature was performed, and slides centrifuged to dry. Slides were immediately scanned using a VersArray scanner (BioRad) at appropriate laser power and PhotoMultiplier Tube settings so that high intensity spots were not saturated. Spots were quantitated and background signals removed using ArrayPro software (Media Cybernetics, Inc).
75 GSM31976 ME7-21dpi-2 11,136 Canadian Science Centre for Human and Animal Health 2004-10-10 [cDNA Array] BMAP_HGPD (GPL1487) RNA Mus musculus
Mus musculus
pooled C57BL/6 mice were inoculated intracerebrally with 20 µl of 1% brain homogenate which was obtained from the TSE Resource Centre, Institute for Animal Health, Compton, UK. Mock-infected control mice were inoculated intra-cerebrally with 20 µl of PBS. The brains were removed at the appropriate time-points and stored at -80 C in RNALater (Ambion) until all experimental time points were completed. Total RNA was isolated from the stored tissue samples by homogenization in Trizol reagent (Invitrogen). RNA was further purified using RNeasy columns (Qiagen) according to the manufacturers instructions. 10 µg of total RNA as a template for oligo -dT primed reverse transcription and incorporated amino allyl -dUTP (Sigma) into the cDNA, essentially following the Institute for Genomic Research, Rockville, MD, USA (TIGR) published protocol http://pga.tigr.org/sop/M004_1a.pdf The remaining RNA template was hydrolysed and the cDNA product purified using the QIAquick PCR purification system (Qiagen). cDNA was dried down, then resuspended in 0.1 M Na2CO3, pH9.0 buffer, and incubated for 1 hour in either an Alexa Fluor555 (AF555) or Alexa Fluor647(AF647) mono-functional reactive dye (Molecular Probes) made up in DMSO. Labelled cDNA was also purified using QIAquick PCR purification columns. Labelled cDNA was dried down and resuspended in 60 µl DIG Easy Hyb hybridisation buffer (Roche) containing calf thymus DNA (Sigma) and yeast tRNA (Life Technologies). The labelled cDNAs were applied to arrays under M Series Lifter Slips (Erie Scientific Company) and the slides incubated in a hybridisation chamber at 42oC for 16 hours. Following hybridisation lifter slips were removed and the arrays washed a total of 3 times for 5 minutes first in1 X SSC, 0.2% SDS, and then 3 times for 5 minutes in 0.1 X SSC, 0.2% SDS pre-warmed to 42°C. A final wash in 0.1 X SSC at room temperature was performed, and slides centrifuged to dry. Slides were immediately scanned using a VersArray scanner (BioRad) at appropriate laser power and PhotoMultiplier Tube settings so that high intensity spots were not saturated. Spots were quantitated and background signals removed using ArrayPro software (Media Cybernetics, Inc).
76 GSM31977 ME7-21dpi-3 11,136 Canadian Science Centre for Human and Animal Health 2004-10-10 [cDNA Array] BMAP_HGPD (GPL1487) RNA Mus musculus
Mus musculus
pooled C57BL/6 mice were inoculated intracerebrally with 20 µl of 1% brain homogenate which was obtained from the TSE Resource Centre, Institute for Animal Health, Compton, UK. Mock-infected control mice were inoculated intra-cerebrally with 20 µl of PBS. The brains were removed at the appropriate time-points and stored at -80 C in RNALater (Ambion) until all experimental time points were completed. Total RNA was isolated from the stored tissue samples by homogenization in Trizol reagent (Invitrogen). RNA was further purified using RNeasy columns (Qiagen) according to the manufacturers instructions. 10 µg of total RNA as a template for oligo -dT primed reverse transcription and incorporated amino allyl -dUTP (Sigma) into the cDNA, essentially following the Institute for Genomic Research, Rockville, MD, USA (TIGR) published protocol http://pga.tigr.org/sop/M004_1a.pdf The remaining RNA template was hydrolysed and the cDNA product purified using the QIAquick PCR purification system (Qiagen). cDNA was dried down, then resuspended in 0.1 M Na2CO3, pH9.0 buffer, and incubated for 1 hour in either an Alexa Fluor555 (AF555) or Alexa Fluor647(AF647) mono-functional reactive dye (Molecular Probes) made up in DMSO. Labelled cDNA was also purified using QIAquick PCR purification columns. Labelled cDNA was dried down and resuspended in 60 µl DIG Easy Hyb hybridisation buffer (Roche) containing calf thymus DNA (Sigma) and yeast tRNA (Life Technologies). The labelled cDNAs were applied to arrays under M Series Lifter Slips (Erie Scientific Company) and the slides incubated in a hybridisation chamber at 42oC for 16 hours. Following hybridisation lifter slips were removed and the arrays washed a total of 3 times for 5 minutes first in1 X SSC, 0.2% SDS, and then 3 times for 5 minutes in 0.1 X SSC, 0.2% SDS pre-warmed to 42°C. A final wash in 0.1 X SSC at room temperature was performed, and slides centrifuged to dry. Slides were immediately scanned using a VersArray scanner (BioRad) at appropriate laser power and PhotoMultiplier Tube settings so that high intensity spots were not saturated. Spots were quantitated and background signals removed using ArrayPro software (Media Cybernetics, Inc).
77 GSM31978 ME7-21dpi-4 11,136 Canadian Science Centre for Human and Animal Health 2004-10-10 [cDNA Array] BMAP_HGPD (GPL1487) RNA Mus musculus
Mus musculus
pooled C57BL/6 mice were inoculated intracerebrally with 20 µl of 1% brain homogenate which was obtained from the TSE Resource Centre, Institute for Animal Health, Compton, UK. Mock-infected control mice were inoculated intra-cerebrally with 20 µl of PBS. The brains were removed at the appropriate time-points and stored at -80 C in RNALater (Ambion) until all experimental time points were completed. Total RNA was isolated from the stored tissue samples by homogenization in Trizol reagent (Invitrogen). RNA was further purified using RNeasy columns (Qiagen) according to the manufacturers instructions. 10 µg of total RNA as a template for oligo -dT primed reverse transcription and incorporated amino allyl -dUTP (Sigma) into the cDNA, essentially following the Institute for Genomic Research, Rockville, MD, USA (TIGR) published protocol http://pga.tigr.org/sop/M004_1a.pdf The remaining RNA template was hydrolysed and the cDNA product purified using the QIAquick PCR purification system (Qiagen). cDNA was dried down, then resuspended in 0.1 M Na2CO3, pH9.0 buffer, and incubated for 1 hour in either an Alexa Fluor555 (AF555) or Alexa Fluor647(AF647) mono-functional reactive dye (Molecular Probes) made up in DMSO. Labelled cDNA was also purified using QIAquick PCR purification columns. Labelled cDNA was dried down and resuspended in 60 µl DIG Easy Hyb hybridisation buffer (Roche) containing calf thymus DNA (Sigma) and yeast tRNA (Life Technologies). The labelled cDNAs were applied to arrays under M Series Lifter Slips (Erie Scientific Company) and the slides incubated in a hybridisation chamber at 42oC for 16 hours. Following hybridisation lifter slips were removed and the arrays washed a total of 3 times for 5 minutes first in1 X SSC, 0.2% SDS, and then 3 times for 5 minutes in 0.1 X SSC, 0.2% SDS pre-warmed to 42°C. A final wash in 0.1 X SSC at room temperature was performed, and slides centrifuged to dry. Slides were immediately scanned using a VersArray scanner (BioRad) at appropriate laser power and PhotoMultiplier Tube settings so that high intensity spots were not saturated. Spots were quantitated and background signals removed using ArrayPro software (Media Cybernetics, Inc).
78 GSM31979 ME7-21dpi-5 11,136 Canadian Science Centre for Human and Animal Health 2004-10-10 [cDNA Array] BMAP_HGPD (GPL1487) RNA Mus musculus
Mus musculus
pooled C57BL/6 mice were inoculated intracerebrally with 20 µl of 1% brain homogenate which was obtained from the TSE Resource Centre, Institute for Animal Health, Compton, UK. Mock-infected control mice were inoculated intra-cerebrally with 20 µl of PBS. The brains were removed at the appropriate time-points and stored at -80 C in RNALater (Ambion) until all experimental time points were completed. Total RNA was isolated from the stored tissue samples by homogenization in Trizol reagent (Invitrogen). RNA was further purified using RNeasy columns (Qiagen) according to the manufacturers instructions. 10 µg of total RNA as a template for oligo -dT primed reverse transcription and incorporated amino allyl -dUTP (Sigma) into the cDNA, essentially following the Institute for Genomic Research, Rockville, MD, USA (TIGR) published protocol http://pga.tigr.org/sop/M004_1a.pdf The remaining RNA template was hydrolysed and the cDNA product purified using the QIAquick PCR purification system (Qiagen). cDNA was dried down, then resuspended in 0.1 M Na2CO3, pH9.0 buffer, and incubated for 1 hour in either an Alexa Fluor555 (AF555) or Alexa Fluor647(AF647) mono-functional reactive dye (Molecular Probes) made up in DMSO. Labelled cDNA was also purified using QIAquick PCR purification columns. Labelled cDNA was dried down and resuspended in 60 µl DIG Easy Hyb hybridisation buffer (Roche) containing calf thymus DNA (Sigma) and yeast tRNA (Life Technologies). The labelled cDNAs were applied to arrays under M Series Lifter Slips (Erie Scientific Company) and the slides incubated in a hybridisation chamber at 42oC for 16 hours. Following hybridisation lifter slips were removed and the arrays washed a total of 3 times for 5 minutes first in1 X SSC, 0.2% SDS, and then 3 times for 5 minutes in 0.1 X SSC, 0.2% SDS pre-warmed to 42°C. A final wash in 0.1 X SSC at room temperature was performed, and slides centrifuged to dry. Slides were immediately scanned using a VersArray scanner (BioRad) at appropriate laser power and PhotoMultiplier Tube settings so that high intensity spots were not saturated. Spots were quantitated and background signals removed using ArrayPro software (Media Cybernetics, Inc).
79 GSM31980 ME7-21dpi-6 11,136 Canadian Science Centre for Human and Animal Health 2004-10-10 [cDNA Array] BMAP_HGPD (GPL1487) RNA Mus musculus
Mus musculus
pooled C57BL/6 mice were inoculated intracerebrally with 20 µl of 1% brain homogenate which was obtained from the TSE Resource Centre, Institute for Animal Health, Compton, UK. Mock-infected control mice were inoculated intra-cerebrally with 20 µl of PBS. The brains were removed at the appropriate time-points and stored at -80 C in RNALater (Ambion) until all experimental time points were completed. Total RNA was isolated from the stored tissue samples by homogenization in Trizol reagent (Invitrogen). RNA was further purified using RNeasy columns (Qiagen) according to the manufacturers instructions. 10 µg of total RNA as a template for oligo -dT primed reverse transcription and incorporated amino allyl -dUTP (Sigma) into the cDNA, essentially following the Institute for Genomic Research, Rockville, MD, USA (TIGR) published protocol http://pga.tigr.org/sop/M004_1a.pdf The remaining RNA template was hydrolysed and the cDNA product purified using the QIAquick PCR purification system (Qiagen). cDNA was dried down, then resuspended in 0.1 M Na2CO3, pH9.0 buffer, and incubated for 1 hour in either an Alexa Fluor555 (AF555) or Alexa Fluor647(AF647) mono-functional reactive dye (Molecular Probes) made up in DMSO. Labelled cDNA was also purified using QIAquick PCR purification columns. Labelled cDNA was dried down and resuspended in 60 µl DIG Easy Hyb hybridisation buffer (Roche) containing calf thymus DNA (Sigma) and yeast tRNA (Life Technologies). The labelled cDNAs were applied to arrays under M Series Lifter Slips (Erie Scientific Company) and the slides incubated in a hybridisation chamber at 42oC for 16 hours. Following hybridisation lifter slips were removed and the arrays washed a total of 3 times for 5 minutes first in1 X SSC, 0.2% SDS, and then 3 times for 5 minutes in 0.1 X SSC, 0.2% SDS pre-warmed to 42°C. A final wash in 0.1 X SSC at room temperature was performed, and slides centrifuged to dry. Slides were immediately scanned using a VersArray scanner (BioRad) at appropriate laser power and PhotoMultiplier Tube settings so that high intensity spots were not saturated. Spots were quantitated and background signals removed using ArrayPro software (Media Cybernetics, Inc).
80 GSM31981 ME7-21dpi-7 11,136 Canadian Science Centre for Human and Animal Health 2004-10-10 [cDNA Array] BMAP_HGPD (GPL1487) RNA Mus musculus
Mus musculus
pooled C57BL/6 mice were inoculated intracerebrally with 20 µl of 1% brain homogenate which was obtained from the TSE Resource Centre, Institute for Animal Health, Compton, UK. Mock-infected control mice were inoculated intra-cerebrally with 20 µl of PBS. The brains were removed at the appropriate time-points and stored at -80 C in RNALater (Ambion) until all experimental time points were completed. Total RNA was isolated from the stored tissue samples by homogenization in Trizol reagent (Invitrogen). RNA was further purified using RNeasy columns (Qiagen) according to the manufacturers instructions. 10 µg of total RNA as a template for oligo -dT primed reverse transcription and incorporated amino allyl -dUTP (Sigma) into the cDNA, essentially following the Institute for Genomic Research, Rockville, MD, USA (TIGR) published protocol http://pga.tigr.org/sop/M004_1a.pdf The remaining RNA template was hydrolysed and the cDNA product purified using the QIAquick PCR purification system (Qiagen). cDNA was dried down, then resuspended in 0.1 M Na2CO3, pH9.0 buffer, and incubated for 1 hour in either an Alexa Fluor555 (AF555) or Alexa Fluor647(AF647) mono-functional reactive dye (Molecular Probes) made up in DMSO. Labelled cDNA was also purified using QIAquick PCR purification columns. Labelled cDNA was dried down and resuspended in 60 µl DIG Easy Hyb hybridisation buffer (Roche) containing calf thymus DNA (Sigma) and yeast tRNA (Life Technologies). The labelled cDNAs were applied to arrays under M Series Lifter Slips (Erie Scientific Company) and the slides incubated in a hybridisation chamber at 42oC for 16 hours. Following hybridisation lifter slips were removed and the arrays washed a total of 3 times for 5 minutes first in1 X SSC, 0.2% SDS, and then 3 times for 5 minutes in 0.1 X SSC, 0.2% SDS pre-warmed to 42°C. A final wash in 0.1 X SSC at room temperature was performed, and slides centrifuged to dry. Slides were immediately scanned using a VersArray scanner (BioRad) at appropriate laser power and PhotoMultiplier Tube settings so that high intensity spots were not saturated. Spots were quantitated and background signals removed using ArrayPro software (Media Cybernetics, Inc).
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