Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(12)		   Tiling Array
(4)		   cDNA Array
(35)		   Oligo Array
(229)		   Bead Array
(2)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(4)		   HT-Seq
(102)		   Other
(40)		   All
(430)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
21 GPL15339 NimbleGen B. Taurus and T. annulata 385K 080829_B_taurus_JK_EXP 34,426 University of Glasgow 2012-03-12 NimbleGen Theileria annulata,Bos taurus
Theileria annulata,Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen B. Taurus and T. annulata 385K 080829_B_taurus_JK_EXP, 385K expression array representing all available RefSeq RNA sequences plus additional EST sequences for Bos taurus and including all predicted coding sequences of the bovine intracellular parasite Theileria annulata. 60 mer probe array, five probes per gene, replicated in 2 blocks. 080829_B_taurus_JK_EXP.ndf 080829_B_taurus_JK_EXP.ngd
22 GPL8223 NimbleGen Plasmodium yoelii + Mus musculus 189K array v1.0 32,651 SBRI 2009-02-24 NimbleGen Plasmodium yoelii,Mus musculus
Plasmodium yoelii,Mus musculus		 Oligo Array in situ oligonucleotide, NimbleGen Plasmodium yoelii + Mus musculus 189K array v1.0, NimbleGen design name 2006-05-15_Tarun_Plasmodium, NimbleGen design ID 3624. Expression design for P. berghei and P. yoelli with 12 probes/gene. Additional control probes were included in separate containers. 100 copies of GFP probes (12/species) were included in the eGFP container. Design also contains 188,608 60mer probes representing 32,650 transcripts from mouse.
23 GPL10378 NimbleGen Moraxella catarrhalis BBH18 4x72K custom design 29,983 Radboud University Medical Centre 2010-05-03 NimbleGen unidentified
unidentified		 Oligo Array in situ oligonucleotide, NimbleGen Moraxella catarrhalis BBH18 4x72K custom design, The Nimblegen array contained 1-118 probes per predicted CDS with an average coverage of 15 probes per CDS, probes on both strands within the CRISPR1 and CRISPR2 regions, and 1,103 negative control probes with a similar length distribution and CG content as the experimental probes. Please note that the platform organism was updated on June 6, 2013 as per http://jb.asm.org/content/194/24/7021
24 GPL14978 NimbleGen Rana muscosa/sierrae 12-plex Oligo Custom Expression Array [100211_RM_MS_EXP] 29,258 University of Idaho 2011-12-07 NimbleGen Rana muscosa,unidentified
Rana muscosa,unidentified		 Oligo Array in situ oligonucleotide, NimbleGen Rana muscosa/sierrae 12-plex Oligo Custom Expression Array [100211_RM_MS_EXP], The microarray contained 127,867 60-mer probes representing a possible 29,259 expressed transcripts (probe sets). Probe sets were defined as all probes that mapped to a single transcript, which in turn mapped to a single gene. Probe sequences within the ndf file. SLIDE_LAYOUT_NAME: NimbleChip_HX12 DESIGN_NAME: 100211_RM_MS_EXP DESIGN_ID: 11375
25 GPL7621 JCVI Pseudomonas fluorescens Pf-5 28k v2.0 27,648 Macquarie University 2008-11-10 J. Craig Venter Institute unidentified
unidentified		 Oligo Array mixed spotted oligonucleotide/cDNA, JCVI Pseudomonas fluorescens Pf-5 28k v2.0,
26 GPL6461 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus 23,797 Mayo Clinic 2008-02-05 Homo sapiens,Bos taurus,Vaccinia virus
Homo sapiens,Bos taurus,Vaccinia virus		 Other MS, 2D-LC MS/MS Analyses of HLA Class I Peptides Isolated from B-cells Infected with Vaccinia Virus, B-cell cultures were infected with live vaccinia virus (NYBOH strain). Cells were lysed, HLA/peptide complexes were enriched by immunoaffinity (W6/32 mAb), peptides were released with acid and separated from HLA proteins by 10 kDa ultrafilitration. HLA class I peptides were separated and identified by 2-dimensional liquid chromatography and tandem mass spectrometry to identify class I peptides derived from vaccinia proteins, that were being presented to the immune system.
27 GPL7620 JCVI Pseudomonas fluorescens Pf-5 23k v1.0 23,232 Macquarie University 2008-11-10 J. Craig Venter Institute unidentified
unidentified		 Oligo Array mixed spotted oligonucleotide/cDNA, JCVI Pseudomonas fluorescens Pf-5 23k v1.0,
28 GPL9757 [stSmel_Mtra] SRL_SU Sinorhizobium meliloti/Medicago truncatula dual-genome SymbiosisChip, Affymetrix part number 510699 22,973 Stanford University 2009-12-07 Affymetrix Sinorhizobium meliloti,Medicago truncatula
Sinorhizobium meliloti,Medicago truncatula		 GeneChip in situ oligonucleotide, [stSmel_Mtra] SRL_SU Sinorhizobium meliloti/Medicago truncatula dual-genome SymbiosisChip, Affymetrix part number 510699, The dual genome Affymetrix SymbiosisChip contains probe sets for S. meliloti ORFs annotated in 2001, intergenic regions over 150 bp, and ~10,000 probe sets corresponding to expressed sequence tags of the plant host, Medicago truncatula.
29 GPL13705 Glomus intraradices EST expression array 22,404 INRA 2011-06-09 Roche NimbleGen unidentified
unidentified		 MIXTURE in situ oligonucleotide, Glomus intraradices EST expression array, This is a condensed platform of the full array which has probes designed from a robust set of non-redundant virtual transcripts (NRVT) (25,906, ~20Mb) transcribed in quiescent and germinated spores, extraradical mycelium (ERM) and symbiotic roots of Glomus intraradices produced by Sanger- and 454-sequencing. The G. intraradices EST expression array (4 x 72K) manufactured by Roche NimbleGen Systems Limited (Madison, WI) contained three independent, non identical, 60-mer probes per sequence. Included in the oligoarray were 22,402 G. intraradices non-redundant transcripts, 5785 random 60-mer control probes and labeling controls.
30 GPL14357 NimbleGen Eucalyptus 386K array v.1.0. 21,413 Universidade Federal do Rio Grande do Sul 2011-08-27 NimbleGen unidentified
unidentified		 Oligo Array in situ oligonucleotide, NimbleGen Eucalyptus 386K array v.1.0., NimbleGen design name 2006-02-21_Eucalyptus_50mer, NimbleGen design ID 3112, NimbleGen Order ID 3369. Standard expression design for 21,442 ESTs from Eucalyptus spp. with nine 50-mer probes per EST. Each probe replicated 2 times on chip (2 blocks per chip).
31 GPL16519 NimbleGen_Botrytis_4plex [080425_Botrytis_4plex_expr] 21,200 University of Kaiserslautern 2013-01-17 NimbleGen Botryotinia fuckeliana B05.10,unidentified
Botryotinia fuckeliana B05.10,unidentified		 Oligo Array spotted oligonucleotide, NimbleGen_Botrytis_4plex [080425_Botrytis_4plex_expr], NimbleGen design name: 080425_Botrytis_4plex_expr. Order IDs: 16947 and 25188. Probe length: 60mers. Three probes per gene. The design includes random GC and other control probes. The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files. GeneID number for the ORF to which the indicated probe is directed; Gene-ID is similar to Seq-ID but underscore was replaced by point (see ngf file). For further gene infomation these numbers can be submitted to http://www.broadinstitute.org/annotation/genome/botrytis_cinerea/FeatureSearch.html.
32 GPL13623 Umea Lucidea array 21,168 Umeå University 2011-05-19 Clinical bacteriology, Umeå university Pinus sylvestris,Mus musculus
Pinus sylvestris,Mus musculus		 cDNA Array spotted DNA/cDNA, Umea Lucidea array, The in-house produced cDNA-array contains 44 clones: 19 clones from mice, 4 clones from Pine (involved in photosynthesis) and 21 artificial clones from the Lucidea Universal ScoreCard (Amersham Bioscienses), where each clone was printed 480 times in 48 identically designed sub-grids.
33 GPL14894 SMD Print_1670 CAT07L3 (Saccharomyces cerevisiae and Methanococcus jannaschii) 20,352 Stanford Microarray Database (SMD) 2011-11-16 Stanford Functional Genomics Facility, Stanford School of Medicine Methanocaldococcus jannaschii,Saccharomyces cerevisiae
Methanocaldococcus jannaschii,Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, SMD Print_1670 CAT07L3 (Saccharomyces cerevisiae and Methanococcus jannaschii),
34 GPL10183 Agilent TNPRC Macaca mulatta 4x44k Array [Probe Name version] 20,217 Tulane National Primate Research Center 2010-03-15 Agilent Technologies Macaca mulatta,Homo sapiens
Macaca mulatta,Homo sapiens		 Oligo Array spotted oligonucleotide, Agilent TNPRC Macaca mulatta 4x44k Array [Probe Name version], 43,803 rhesus macaque monkey probes are represented on this chip.
35 GPL10021 NRC-BRI biofilms 10K v1.0 20,160 NRC-BRI 2010-02-09 NRC-BRI, Environmental Microbiology
cDNA Array spotted DNA/cDNA, NRC-BRI biofilms 10K v1.0,
36 GPL16171 NimbleGen Moraxella catarrhalis BBH18 4x72K custom design GAF array (mapping) 20,078 Radboud University Medical Centre 2012-10-12 NimbleGen unidentified
unidentified		 Oligo Array in situ oligonucleotide, NimbleGen Moraxella catarrhalis BBH18 4x72K custom design GAF array (mapping), The custom-designed Nimblegen 4x72K GAF microarray design was based on the AluI-restriction fragments of the M. catarrhalis BBH18 genome (de Vries et al., 2010 J Bacteriol 192: 3574-3583). Nimblegen probes (50-72 nt) were designed on the 3’ and 5’ ends of all AluI fragments >70 nucleotides (nt) and in case of fragments >400 bp, spaced every ~ 200 bp on both strands. This allows mapping of the transposon insertion with a ~200 bp resolution. Of the 6,085 AluI fragments larger than 70 nt, probes could be designed for 6,003 fragments, resulting in a total of 20,078 experimental probes. In addition to three replicates of each experimental probe, the array contained 11,803 negative-control probes with a length distribution and G+C content similar to those of the experimental control probes. Moraxella catarrhalis GAF.ndf Moraxella catarrhalis GAF.pos
37 GPL4048 Genopole Mouse oligo array from MWG version 1 19,152 INRA 2006-08-01 OUEST Genopole (Nantes) Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 Oligo Array spotted oligonucleotide, Genopole Mouse oligo array from MWG version 1,
38 GPL980 15 K cDNA 17,280 U.T. Southwestern Medical Center 2004-02-10 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 cDNA Array spotted DNA/cDNA, 15 K cDNA, Mouse and human 15,000 gene cDNA array
39 GPL6253 JCVI PFGRC Plasmodium Sal-1 18K v1 array designed primarily based on strain Sal-1 17,218 J. Craig Venter Institute 2007-12-06 JCVI PFGRC unidentified
unidentified		 Oligo Array spotted oligonucleotide, JCVI PFGRC Plasmodium Sal-1 18K v1 array designed primarily based on strain Sal-1, This set includes 16120 oligonucleotides, has 18240 spots distributed in 48 blocks.
40 GPL10765 Genotypic designed Agilent in situ synthesised Mus musculus & Staphylococcus aureus gene expression profiling microarray 15,744 Genotypic Technology 2010-08-06 Agilent Technologies Staphylococcus aureus,Mus musculus
Staphylococcus aureus,Mus musculus		 Oligo Array in situ oligonucleotide, Genotypic designed Agilent in situ synthesised Mus musculus & Staphylococcus aureus gene expression profiling microarray,
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