Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(42)
  Oligo Array
(267)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(542)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
21 GPL14164 UW-Madison_GLBRC_Fox_Currie Streptomyces sp. SirexAA-E (ActE) 72k v 1.0 6,500 University of Wisconsin Madison 2011-08-18 Roche NimbleGen unidentified
unidentified
Oligo Array in situ oligonucleotide, UW-Madison_GLBRC_Fox_Currie Streptomyces sp. SirexAA-E (ActE) 72k v 1.0, UW-Madison_GLBRC_Fox_Currie Streptomyces sp. SirexAA-E (ActE) 72k v 1.0 Carbon Source Induced Gene Expression
22 GPL11674 UW/NimbleGen_humangorilla_custom_dupsdels 2,097,383 University of Washington 2011-01-31 Nimblegen Gorilla gorilla,Homo sapiens
Gorilla gorilla,Homo sapiens
Oligo Array in situ oligonucleotide, UW/NimbleGen_humangorilla_custom_dupsdels,
23 GPL7152 Ambion Human Mouse Rat miRNA microarray (probes_1564V1_Oct05) 1,536 University of Ulm 2008-08-08 Ambion Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, Ambion Human Mouse Rat miRNA microarray (probes_1564V1_Oct05), http://www.ambion.com/techlib/resources/miRNA_array/ Ambion_probes_1564V1_Oct05
24 GPL4220 UTTH_Mouse/P.bergheiANKA_44K_v1.0 42,034 University of Toronto 2006-08-25 Agilent Technologies Plasmodium berghei,Mus musculus
Plasmodium berghei,Mus musculus
Oligo Array in situ oligonucleotide, UTTH_Mouse/P.bergheiANKA_44K_v1.0,
25 GPL5531 Exiqon-Rat/Mouse/Human-540-v8.0 2,240 University of Toronto 2007-07-13 Exiqon (Exiqon, Vedbaek, Denmark) Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, Exiqon-Rat/Mouse/Human-540-v8.0,
26 GPL10292 Topic-defined PIQORTM miRXplore Microarray 632 University of the Studies of Milan 2010-04-06 Miltenyi Biotec GmbH, Cologne, Germany Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, Topic-defined PIQORTM miRXplore Microarray,
27 GPL13324 University of Sydney CombiMatrix 12K PANarray 10,251 University of Sydney 2011-03-24 Now manufactured by CustomArray Inc, WA, USA Pseudomonas aeruginosa UCBPP-PA14,Pseudomonas aeruginosa PAO1,Pseudomonas aeruginosa 2192,Pseudomonas aeruginosa C3719,Pseudomonas aeruginosa PA7,Pseudomonas aeruginosa PACS2,Pseudomonas aeruginosa LESB58,unidentified
Pseudomonas aeruginosa UCBPP-PA14,Pseudomonas aeruginosa PAO1,Pseudomonas aeruginosa 2192,Pseudomonas aeruginosa C3719,Pseudomonas aeruginosa PA7,Pseudomonas aeruginosa PACS2,Pseudomonas aeruginosa LESB58,unidentified
cDNA Array spotted DNA/cDNA, University of Sydney CombiMatrix 12K PANarray, Contains genes from eight Pseudomonas aeruginosa strain genomes: AES-1, PAO1, UCBPP-PA14, PA7, c3719, PA2192, PACS2 and LESB58 (Liverpool Epidemic Strain).
28 GPL17536 MGC cDNA screening array 16,512 University of Southern California 2013-08-06 Scripps Cell Based Screening and Genomics core at the Scripps Research Institute's Florida Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
cDNA Array spotted DNA/cDNA, MGC cDNA screening array,
29 GPL4391 salivary gland secretion 240 University of Rochester Medical Center 2006-10-05 University of Rochester Medical Center, Rochester, NY Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
cDNA Array spotted DNA/cDNA, salivary gland secretion, UltraGap Gamma Amino Propyl Silane slides (Corning, NY)
30 GPL15030 Agilent Human, KSHV, and EBV 44K AMADID #027774 14,601 University of Pittsburgh 2011-12-19 Agilent Technologies Homo sapiens,Human herpesvirus 4,Human herpesvirus 8
Homo sapiens,Human herpesvirus 4,Human herpesvirus 8
Oligo Array in situ oligonucleotide, Agilent Human, KSHV, and EBV 44K AMADID #027774,
31 GPL14829 Exiqon miRCURY LNA microRNA array v.11.0 Gene ID Version - hsa, mmu & rno 1,976 University of Pennsylvania School of Medicine 2011-11-02 Exiqon A/S Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, Exiqon miRCURY LNA microRNA array v.11.0 Gene ID Version - hsa, mmu & rno, Array represents miRBase version 11.0 with additional features. ArrayContents_CurrentNameColumnCoverage: Homo sapiens and related vira:93.31%, Mus musculus and related vira: 88.6%, Rattus norvegicus:98.85%
32 GPL3699 RAKEv2 4,608 University of Pennsylvania 2006-04-24 Penn Microarray Facility Arabidopsis thaliana,Homo sapiens,Mus musculus,Rattus norvegicus
Arabidopsis thaliana,Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, RAKEv2, Printed glass slide microarray for RNA-primed Array-based Klenow Enzyme assay for detection of microRNAs
33 GPL1464 RAKE1 1,536 University of Pennsylvania 2004-09-22 Arabidopsis thaliana,Homo sapiens,Mus musculus,Rattus norvegicus
Arabidopsis thaliana,Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, RAKE1, Printed glass slide microarray for RNA-primed Array-based Klenow Enzyme assay. Used to detect specific miRNA target hybridization to oligo probes, without prior manipulation of the targeted microRNAs. Keywords = microRNA Keywords = Klenow Keywords = biotin
34 GPL8871 OSU_CCC v4.0 [condensed version] 784 University of Padova 2009-07-16 Microarray Shared Resource, Comprehensive Cancer Center, The Ohio State University (OSU-CCC) Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array spotted oligonucleotide, OSU_CCC v4.0 [condensed version],
35 GPL10385 μRNA spotted oligo array version 17.0 microRNA 1461 features human mouse rat chicken viral 1,461 University of Oxford 2010-05-05 University of Oxford Gallus gallus,Homo sapiens,Mus musculus,Rattus norvegicus
Gallus gallus,Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, μRNA spotted oligo array version 17.0 microRNA 1461 features human mouse rat chicken viral,
36 GPL9022 UON_Campylobacter oligo array v1 5,190 University of Nottingham 2009-08-12 University of Nottingham unidentified,Campylobacter jejuni RM1221,Campylobacter coli RM2228
unidentified,Campylobacter jejuni RM1221,Campylobacter coli RM2228
Oligo Array spotted oligonucleotide, UON_Campylobacter oligo array v1,
37 GPL15507 microRNA array v10 four genome 1,444 University of North Carolina 2012-04-30 Spotted at UNC Danio rerio,Homo sapiens,Mus musculus,Rattus norvegicus
Danio rerio,Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, microRNA array v10 four genome,
38 GPL1899 Human-mouse microRNA array v8.0 238 University of North Carolina 2005-03-09 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array spotted oligonucleotide, Human-mouse microRNA array v8.0, Oligonucleotide probes to 191 human microRNA genes and 198 mouse microRNA genes were designed, antisense to the mature sequence as reported in the Sanger microRNA registry (4/1/04). Probes were spotted at 40 uM on Corning GAPS-II slides in 3X SSC, dried, and crosslinked by 600mJ UV. Slides were prehybridized in 3x SSC, 0.1% SDS, 0.2% BSA for 45 minutes, hybridized for 2h at 37C in 400mM Na2HPO4 pH 7.0, 0.8% BSA, 5% SDS, 12% formamide.
39 GPL1391 Mammalian microRNA array v4.0 124 University of North Carolina 2004-08-02 Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
Oligo Array spotted oligonucleotide, Mammalian microRNA array v4.0, Oligonucleotide probes to 124 non-redundant conserved mouse/human microRNA genes were designed, antisense to the mature sequence as published. Probes were spotted at 40 uM on Corning GAPS-II slides in 3x SSC, dried, and crosslinked by 600 mJ UV. Slides were prehybridized in 3x SSC, 0.1% SDS, 0.2% BSA for 45 minutes, hybridized for 2h at 37C in 400mM Na2HPO4 pH 7.0, 0.8% BSA, 5% SDS, 12% formamide. Keywords = microRNA Keywords = miRNA Keywords = non-coding RNA
40 GPL5797 Ramaciotti centre-miRNA-1488-v8.1 3,136 University of New South Wales 2007-09-04 Ramaciotti centre (UNSW) Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, Ramaciotti centre-miRNA-1488-v8.1, For 2 colour spotted array labelling. 4X4 grip array formation. Duplicates next to each other. Repeated 4X4 on the next grid.
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