Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(743)		   Primates
(5)		   Rodents
(386)		   Mammals
(31)		   Vertebrates
(51)		   Invertebrates
(187)		   Plants
(209)		   Bacteria
(89)		   Viruses
(1)		   Phages
(0)		   Unclassified
(12)		   All
(1,715)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(6)		   Tiling Array
(1)		   cDNA Array
(11)		   Oligo Array
(20)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(13)		   Other
(0)		   All
(51)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
21 Danio spinal cord injury (GSE20460) [Oligo Array] Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7302) Rutgers University 2010-02-22 Danio rerio
Danio rerio		 388,260
(21,570 x 18) 		18 by_platform
by_series
22 Sub-adult RDX Exposure, Whole Body Tissue Investigation (GSE21102) [Oligo Array] Agilent-019597 custom fathead minnow 60mer (8x15k) (GPL10259) US Army ERDC 2010-03-29 Pimephales promelas
Pimephales promelas		 366,432
(15,268 x 24) 		24 by_platform
by_series
23 Gene expression in unfertilized eggs and the MBT stage of zebrafish embryos (GSE20137) [Oligo Array] Agilent Dano rerio 44K custom chip [Agilent-021643 Feature number version] (GPL9998) Norwegian School of Veterinary Science 2010-02-01 Danio rerio
Danio rerio		 316,540
(45,220 x 7) 		3 4 by_platform
by_series
24 Systematic identification of genes involved in embyonic chicken muscle development (GSE20990) [GeneChip] Affymetrix Chicken Genome Array [GgChicken_ENTREZG10] (GPL10234) Peking University 2010-03-22 Gallus gallus
Gallus gallus		 299,880
(12,495 x 24) 		24 by_platform
by_series
25 Systematic analysis of miRNA transcriptome of skeletal muscle identifies novel miRNAs and differentially expressed miRNAs in divergent skeletal muscle growth rates of broiler and layer chickens (GSE20992) [GeneChip] Affymetrix Chicken Genome Array [GgChicken_ENTREZG10] (GPL10234) Peking University 2010-03-22 Gallus gallus
Gallus gallus		 299,880
(12,495 x 24) 		24 by_platform
by_series
26 Massive decrease of maternal polyA mRNA upon post-ovulatory aging in Xenopus tropicalis (GSE21109) [GeneChip] [X_tropicalis] Affymetrix Xenopus tropicalis Genome Array (GPL10263) Institut fuer Zellbiologie 2010-03-29 Xenopus (Silurana) tropicalis
Xenopus tropicalis		 236,084
(59,021 x 4) 		4 by_platform
by_series
27 Transcriptional profiling of embryonic zebrafish expressing a mutant TNNT2 (GSE20179) [Oligo Array] Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Feature Number version) (GPL6457) Massachusetts General Hospital 2010-02-03 Danio rerio
Danio rerio		 180,880
(45,220 x 4) 		4 by_platform
by_series
28 Expression data comparing wild-type and spt mutant zebrafish tissues at two developmental time points. (GSE19955) [GeneChip] [Zebrafish] Affymetrix Zebrafish Genome Array (GPL1319) Colorado State University 2010-01-20 Danio rerio
Danio rerio		 171,787
(15,617 x 11) 		11 by_platform
by_series
29 Stage-specific expression of TNFα regulates bad/bid-mediated apoptosis and RIP1/ROS-mediated secondary necrosis in Birnavirus-infected fish cells (GSE21077) [Oligo Array] MWG_Zebrafish_14K (GPL5182) Academia Sinica 2010-03-26 Danio rerio
Danio rerio		 168,804
(14,067 x 12) 		12 by_platform
by_series
30 Concerted action of Helios and Ikaros balances the strength of B cell receptor signaling and controls the expression of inositol 5-phosphatase SHIP (GSE20946) [cDNA Array] UTU Chicken BursaEST 37K array (GPL10224) University of Turku 2010-03-18 Gallus gallus
Gallus gallus		 147,456
(36,864 x 4) 		4 by_platform
by_series
31 Zebrafish (Danio rerio) 72hpf, WT control vs. MO-Prpf31 injected (GSE20424) [Oligo Array] GIS Zebrafish 22K oligonucleotide array (GPL10074) National University of Singapore 2010-02-19 Danio rerio
Danio rerio		 136,656
(22,776 x 6) 		6 by_platform
by_series
32 Detection of the up-regulated and down-regulated genes in stac mutant of zebrafish by cDNA microarray (GSE20707) [GeneChip] [Zebrafish] Affymetrix Zebrafish Genome Array (GPL1319) Tsinghua University 2010-03-09 Danio rerio
Danio rerio		 124,936
(15,617 x 8) 		8 by_platform
by_series
33 Investigations of gene expression in fathead minnow (Pimephales promelas) brain tissue reveal toxicological impacts of RDX exposure (GSE21153) [cDNA Array] US Army ERDC Fathead minnow brain tissue cDNA 4K Microarray (GPL10277) US Army ERDC 2010-03-31 Pimephales promelas
Pimephales promelas		 123,840
(4,128 x 30) 		30 by_platform
by_series
34 The gene profile of zebrafish guanine binding protein-like 2 (Gnl2) mutant embryos versus wild-type embryos at 22 hours post-fertilization (GSE21134) [Oligo Array] Agilent-013223 D. rerio (Zebrafish) Oligo Microarray G2518A Option 001 (Feature Number version) (GPL2878) Hubrecht Institute 2010-03-30 Danio rerio
Danio rerio		 45,150
(22,575 x 2) 		2 by_platform
by_series
35 Swimming down-regulates ovarian transcriptomic response of rainbow trout Oncorhynchus mykiss (GSE20131) [cDNA Array] UKU_trout_1.8K_v1 (GPL6154) Universitat de Barcelona 2010-02-01 Oncorhynchus mykiss
Oncorhynchus mykiss		 22,464
(11,232 x 2) 		2 by_platform
by_series
36 Identification of miRNAs involved in embyonic chicken muscle development (GSE20947) [Oligo Array] Peking University Chicken miRNA 4k array (GPL10225) Peking University 2010-03-18 Gallus gallus
Gallus gallus		 10,632
(1,772 x 6) 		6 by_platform
by_series
37 Systematic analysis of miRNA transcriptome of skeletal muscle identifies novel miRNAs and differentially expressed miRNAs in divergent skeletal muscle growth rates of broiler and layer chickens (GSE20992) [Oligo Array] Peking University Chicken miRNA 4k array (GPL10225) Peking University 2010-03-22 Gallus gallus
Gallus gallus		 10,632
(1,772 x 6) 		6 by_platform
by_series
38 Cellular and molecular evidence for a role of tumor necrosis factor alpha in the ovulatory mechanism of trout (GSE20296) [cDNA Array] UKU_trout_1.8K_v1 (condensed) (GPL10092) University of Barcelona 2010-02-12 Oncorhynchus mykiss
Oncorhynchus mykiss		 1,726
(1,726 x 1) 		1 by_platform
by_series
39 Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish (GSE20600) [HT Sequencing] Illumina Genome Analyzer (Danio rerio) (GPL10164) Umass Medial School 2010-03-02 Danio rerio
Danio rerio		 6
(0 x 6) 		6 by_platform
by_series
40 Global gene expression analysis of green spotted puffer fish gills in response to environmental calcium changes (GSE19854) [HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947) Centro de Ciências do Mar (CCMAR), CIMAR-Laboratório Associado 2010-01-12 Tetraodon nigroviridis
Tetraodon nigroviridis		 5
(0 x 5) 		5 by_platform
by_series
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