Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)
  Primates
(37)
  Rodents
(1,748)
  Mammals
(295)
  Vertebrates
(402)
  Invertebrates
(1,004)
  Plants
(2,170)
  Bacteria
(1,636)
  Viruses
(78)
  Phages
(8)
  Unclassified
(399)
  All
(11,528)
 
  SAGE NlaIII
(9)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(77)
  Oligo Array
(224)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(402)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
61 GPL6467 University of Padova Sparus aurata 40k array version 1 40,816 Agripolis 2008-02-07 Agilent Technologies Sparus aurata
Sparus aurata
Oligo Array in situ oligonucleotide, University of Padova Sparus aurata 40k array version 1, GE 4x44k oligo microarray that covers 19,715 unique transcripts of the gilthead sea bream (Sparus aurata). Oligonucleotides, 60-mer plus a “linker”, are synthesized directly on glass slide using the Agilent’s SurePrint Tecnology; oligo design was carried out by Agilent and two non overlapping probes were designed for each ESTs cluster. The number of transcripts represented by two probes is 19,664 while 51 targets have only one probe; the total number of target probes in the platform is 39379. Both independent probes designed for the same transcript are named with an univocal ID and distinguished by suffix _1 or _2. Sequence and description of each gene (cluster) are available in the SAPD database (http://enne.cribi.unipd.it:5555/biomart/martview), where cluster ID corresponds to probe ID on the array. (Access to SAPD database will be free after publication. Login and password are now required and will be provided upon request).
62 GPL10704 University of Gothenburg Rainbow trout 15.5K microarray version 2 15,624 University of Gothenburg 2010-07-20 febit gmbh Oncorhynchus mykiss
Oncorhynchus mykiss
Oligo Array in situ oligonucleotide, University of Gothenburg Rainbow trout 15.5K microarray version 2,
63 GPL8254 University of Gothenburg Rainbow trout 15.5K microarray version 1 15,624 University of Gothenburg 2009-03-05 Department of Neuroscience and Physiology, University of Gothenburg / Febit gmbh, Heidelberg, Germany Oncorhynchus mykiss
Oncorhynchus mykiss
Oligo Array in situ oligonucleotide, University of Gothenburg Rainbow trout 15.5K microarray version 1,
64 GPL9907 University of Antwerp Danio rerio oligo microarray_Agilent_15k_EBT 15,225 University of Antwerp 2010-01-14 Agilent Danio rerio
Danio rerio
Oligo Array in situ oligonucleotide, University of Antwerp Danio rerio oligo microarray_Agilent_15k_EBT,
65 GPL6997 UMSMED custom Ictalurus punctatus 9.2k microarray (v2008) 9,216 Naval Medical Research Center 2008-06-25 Microarrays Inc. Ictalurus punctatus
Ictalurus punctatus
cDNA Array spotted DNA/cDNA, UMSMED custom Ictalurus punctatus 9.2k microarray (v2008),
66 GPL10092 UKU_trout_1.8K_v1 (condensed) 1,726 University of Barcelona 2010-02-22 Centre of Biotechnology, Turku, Finland Oncorhynchus mykiss
Oncorhynchus mykiss
cDNA Array spotted DNA/cDNA, UKU_trout_1.8K_v1 (condensed),
67 GPL6154 UKU_trout_1.8K_v1 11,232 Akvaforsk 2007-11-20 Centre of Biotechnology, Turku, Finland Oncorhynchus mykiss
Oncorhynchus mykiss
cDNA Array spotted DNA/cDNA, UKU_trout_1.8K_v1,
68 GPL6155 UKU_trout_1.3K_v2 8,736 Akvaforsk 2007-11-20 Centre of Biotechnology, Turku, Finland Oncorhynchus mykiss
Oncorhynchus mykiss
cDNA Array spotted DNA/cDNA, UKU_trout_1.3K_v2,
69 GPL15067 UKM Lates calcarifer liver and spleen cDNA array 1,601 Universiti Kebangsaan Malaysia 2011-12-27 Universiti Kebangsaan Malaysia Lates calcarifer
Lates calcarifer
cDNA Array spotted DNA/cDNA, UKM Lates calcarifer liver and spleen cDNA array,
70 GPL4518 UFZ/Cell Toxicology_Danio rerio_14k 15,552 UFZ Centre for Environmental Research Leipzig-Halle 2006-11-03 MWG Biotech AG, Ebersbach, Germany/ Leiden Genome Technology Centre, Leiden, The Netherlands Danio rerio
Danio rerio
Oligo Array spotted oligonucleotide, UFZ/Cell Toxicology_Danio rerio_14k,
71 GPL1742 UD_Liver_3.2K 3,456 University of Delaware 2004-12-09 Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, UD_Liver_3.2K, Spotted amplified cDNA array on nylon membrane (8 x 12 cm). 3456 spots Keywords = spotted Keywords = cDNA
72 GPL1737 UD 7.4K Metabolic/Somatic Systems 7,680 University of Delaware 2004-12-08 Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, UD 7.4K Metabolic/Somatic Systems, Spotted amplified cDNA array on glass. 7680 spots corresponding to 7435 genes from Liver and Adipose tissue.
73 GPL9788 Turkey skeletal muscle long oligonucleotide (TSKMLO) microarray 12,288 Michigan State University 2009-12-11 Oligonucleotide design and synthesis: Invitrogen (Carlsbad, CA); Array printing: Michigan State University Research Technology Support Facility (East Lansing, MI) Meleagris gallopavo
Meleagris gallopavo
Oligo Array spotted oligonucleotide, Turkey skeletal muscle long oligonucleotide (TSKMLO) microarray,
74 GPL11161 Turbot-USCMicroarray2.0 14,501 Universidad Santiago Compostela 2010-11-04 Agilent Psetta maxima
Psetta maxima
Oligo Array in situ oligonucleotide, Turbot-USCMicroarray2.0,
75 GPL4254 Threespine Stickleback RAD marker microarray 19,200 University of Oregon 2006-08-31 Michael R Miller - Johnson Lab - University of Oregon Gasterosteus aculeatus
Gasterosteus aculeatus
cDNA Array spotted DNA/cDNA, Threespine Stickleback RAD marker microarray, Awaiting submitter update of Platform features with trackable sequence identifier information.
76 GPL7519 Texas State University/Ron Walter Oryzias latipes 8k array (version 1) 8,046 Texas State University 2008-10-23 Ron Walter's Laboratory of Texas State university Oryzias latipes
Oryzias latipes
Oligo Array spotted oligonucleotide, Texas State University/Ron Walter Oryzias latipes 8k array (version 1),
77 GPL9554 Songbird Neurogenomics Initiative 20K Array 20,160 University of Illinois 2009-11-10 University of Illinois, Functional Genomics Lab Taeniopygia guttata
Taeniopygia guttata
cDNA Array spotted DNA/cDNA, Songbird Neurogenomics Initiative 20K Array,
78 GPL8931 Solea senegalensis 5k oligo microarray 5,087 Université Bordeaux 1 2009-07-27 Oryzon Genomics, Barcelona, Spain Solea senegalensis
Solea senegalensis
Oligo Array in situ oligonucleotide, Solea senegalensis 5k oligo microarray,
79 GPL3548 SLRI_Zebrafish_3.5k_v1 12,672 SLRI/Mount Sinai Hospital 2006-03-14 SLRI/Mount Sinai Hospital, Toronto, Ontario, Canada Danio rerio
Danio rerio
Oligo Array spotted oligonucleotide, SLRI_Zebrafish_3.5k_v1,
80 GPL13286 SHOU miRNA Fishes 1K 987 Shanghai Ocean University 2011-03-16 LC Sciences Paralichthys olivaceus
Paralichthys olivaceus
Oligo Array in situ oligonucleotide, SHOU miRNA Fishes 1K,
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