Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(9)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(10)		   Tiling Array
(10)		   cDNA Array
(77)		   Oligo Array
(224)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(67)		   Other
(1)		   All
(402)		  
«      1   |   2   |   3   |   4      »      
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
21 GPL1737 UD 7.4K Metabolic/Somatic Systems 7,680 University of Delaware 2004-12-08 Gallus gallus
Gallus gallus		 cDNA Array spotted DNA/cDNA, UD 7.4K Metabolic/Somatic Systems, Spotted amplified cDNA array on glass. 7680 spots corresponding to 7435 genes from Liver and Adipose tissue.
22 GPL4254 Threespine Stickleback RAD marker microarray 19,200 University of Oregon 2006-08-31 Michael R Miller - Johnson Lab - University of Oregon Gasterosteus aculeatus
Gasterosteus aculeatus		 cDNA Array spotted DNA/cDNA, Threespine Stickleback RAD marker microarray, Awaiting submitter update of Platform features with trackable sequence identifier information.
23 GPL9554 Songbird Neurogenomics Initiative 20K Array 20,160 University of Illinois 2009-11-10 University of Illinois, Functional Genomics Lab Taeniopygia guttata
Taeniopygia guttata		 cDNA Array spotted DNA/cDNA, Songbird Neurogenomics Initiative 20K Array,
24 GPL1212 salmonid fish version 1.0 8,736 Akvaforsk 2004-05-04 Oncorhynchus mykiss
Oncorhynchus mykiss		 cDNA Array spotted DNA/cDNA, salmonid fish version 1.0, contains 1300 rainbow trout genes spotted in 6 replicates
25 GPL966 Salmonid 3600 - Feb 17 2003 8,736 University of Wisconsin - Milwaukee 2004-01-28 Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar		 cDNA Array spotted DNA/cDNA, Salmonid 3600 - Feb 17 2003, GRASP ~3600 gene salmonid cDNA microarray Keywords = Atlantic salmon Keywords = rainbow trout Keywords = salmonid
26 GPL1516 SA-DEV-VS1 21,600 HCMR 2004-10-19 Sparus aurata
Sparus aurata		 cDNA Array spotted DNA/cDNA, SA-DEV-VS1, For the microarray production a cDNA library of mixed embryos/larvae of gilthead sea bream, Sparus aurata (Sarropoulou et al., in press) was used. A total of 10,176 clones were arrayed into 384 square well plates. In order to amplify the inserts culture PCR was performed as followed. The total volume of one PCR reaction was 50 µl, containing 43.5 µl reaction mix (2 µl 10x PCR Puffer, 0.04 µl 100 mM of each dATP, dCTP, dGTP and dTTP, 12.12 µl dH20), 1.5 µl of T7 and 1.5 µl of T3 primer (20 µM), 1 µl Taq polymerase (5U/µl) and 2.5 µl of culture. The PCR program utilized consisted of 1 step of 94ºC for 1 min 20 s, followed by 35 cycles of 94ºC for 1 min, 50ºC for 1 min, 72ºC for 1 min 30 s; the program terminated with a final step of 72ºC for 5min. Each reaction was performed twice; PCR products were combined, separated by agarose gel (2%) electrophoresis and visualized by transillumination in the presence of ethidium bromide (EtBr) in order to check insert size. Purification of PCR products was perfomed via the GFX-96TM Polymerase Chain Reaction (PCR) Purification Kit (Amersham Pharmacia) according to the manufacturer’s instructions. The purified products were then dried down by applying vacuum, re-eluted in 3x SSC and 1.5 M betaine to a volume of 10 ml and transferred to 384 well plates. The spotting was performed with the OmniGrid 300 robotic system configured with 48 pins. Each glass slide contains 10,176 PCR amplified inserts in duplicate. The spotted glass slides were baked at 80ºC for 2 h in order to cross-link the DNA onto the glass slide. The slides were then incubated in blocking buffer at 50°C for 30 min, washed twice with Millipore water at room temperature for 2 min and dried by spinning in an Eppendorf 5810R centrifuge for 7 min at 800 rpm.
27 GPL7360 RSMAS Crawford Fundulus 384 cDNA [full array version] 444 University of Miami 2008-09-23 Crawford Laboratory Fundulus heteroclitus
Fundulus heteroclitus		 cDNA Array spotted DNA/cDNA, RSMAS Crawford Fundulus 384 cDNA [full array version],
28 GPL7335 RSMAS Crawford Fundulus 384 cDNA [condensed array version] 212 University of Miami 2008-09-18 Crawford Laboratory- University of Miami Fundulus heteroclitus
Fundulus heteroclitus		 cDNA Array spotted DNA/cDNA, RSMAS Crawford Fundulus 384 cDNA [condensed array version],
29 GPL11189 Rosenstiel School of Marine and Atmospheric Sciences, Crawford and Oleksiak Laboratories, Fundulus heteroclitus 7K array 6,349 University of Miami 2010-11-09 Rosenstiel School of Marine and Atmospheric Sciences, Crawford and Oleksiak Laboratories Fundulus heteroclitus
Fundulus heteroclitus		 cDNA Array spotted DNA/cDNA, Rosenstiel School of Marine and Atmospheric Sciences, Crawford and Oleksiak Laboratories, Fundulus heteroclitus 7K array,
30 GPL10430 Rosenstiel Fundulus heteroclitus 7K array 6,857 University of Miami 2010-05-18 Rosenstiel School of Marine and Atmospheric Sciences, Crawford and Oleksiak Laboratories Fundulus heteroclitus
Fundulus heteroclitus		 cDNA Array spotted DNA/cDNA, Rosenstiel Fundulus heteroclitus 7K array,
31 GPL6976 Rana pirica tadpole-stage cDNA 3k array 3,072 Nihon University 2008-06-19 DNA Tip Institute Rana pirica
Rana pirica		 cDNA Array spotted DNA/cDNA, Rana pirica tadpole-stage cDNA 3k array, Tadpole Rana pirica cDNA microarray Keywords = Tadpole Rana pirica Keywords = cDNA array Keywords = gene expression
32 GPL4860 Rainbow trout custom 8.8k microarray 8,832 Institut national de la santé et de la recherche médicale-INSERM 2007-02-12 INSERM Oncorhynchus mykiss
Oncorhynchus mykiss		 cDNA Array spotted DNA/cDNA, Rainbow trout custom 8.8k microarray,
33 GPL8731 NUIG_salmon_5K array_V2.0 (full array layout) 10,752 NUI Galway 2009-06-17 Liverpool Microarray Facility, School of Biological Sciences, University of Liverpool,Crown St,Liverpool L69 7ZB Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar		 cDNA Array spotted DNA/cDNA, NUIG_salmon_5K array_V2.0 (full array layout), Platform data table reflects full array layout in which all duplicate array features are represented. For funding reasons only those spots identified in subsequent microarray analysis as interesting were sequenced Every sequenced spot has a Genbank Accession Number associated with it.
34 GPL8704 NUIG_salmon_5K array_V1.0 (condensed array layout) 5,377 NUI Galway 2009-06-11 Liverpool Microarray Facility, School of Biological Sciences, University of Liverpool,Crown St,Liverpool L69 7ZB Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar		 cDNA Array spotted DNA/cDNA, NUIG_salmon_5K array_V1.0 (condensed array layout), Platform data table reflects condensed array layout in which duplicate array features are represented only once. ONLY CLONES OF INTEREST HAVE BEEN SEQUENCED AND IDENTIFIED Every sequenced spot has a Genbank Accession Number associated with it.
35 GPL3621 NIH-DUKE ZEBRAFINCH 18K v1.0 18,432 Duke University Medical Center 2006-04-04 NIH Neuroscience Microarray Consortium, DUKE-Erich Jarvis Lab Taeniopygia guttata
Taeniopygia guttata		 cDNA Array spotted DNA/cDNA, NIH-DUKE ZEBRAFINCH 18K v1.0,
36 GPL11020 NIBB Xenopus laevis 4.6K 4,608 Hiroshima University 2010-10-06 Division of Morphogenesis, National Institute for Basic Biology, Nishigonaka, Myodaiji, Okazaki, Aichi 444-8585, Japan. Xenopus laevis
Xenopus laevis		 cDNA Array spotted DNA/cDNA, NIBB Xenopus laevis 4.6K,
37 GPL10723 NCHU Tsaiya duck magnum triplicate array (condensed version) 2,884 National Chung-Hsing University 2010-07-23 National Chung-Hsing University, 250 Kuo Kuang Rd., Taichung 402, Taiwan Anas platyrhynchos
Anas platyrhynchos		 cDNA Array spotted DNA/cDNA, NCHU Tsaiya duck magnum triplicate array (condensed version), Tsaiya duck (Anas platyrhynchos) Sex: female Tissue type: magnum Spotted cDNA array The Platform data table reflects a condensed representation of the array's triplicate features. The full array layout representing all of the individual features is linked below as a supplementary file. ONLY CLONES OF INTEREST HAVE BEEN SEQUENCED AND IDENTIFIED.
38 GPL3311 KLA-1 4,992 Stanford Microarray Database (SMD) 2006-01-05 Janos,,Demeter; Dept. Genetics, CCSR 2255, Stanford, CA, USA, 94305; 726-0075; jdemeter@genome.stanford.edu Austrofundulus limnaeus
Austrofundulus limnaeus		 cDNA Array spotted DNA/cDNA, KLA-1,
39 GPL5351 IOLR_Lithognathus mormyrus_4608_v1.0 4,704 Israel Oceanographic and Limnological Research 2007-06-04 Moshe Tom's laboratory - Israel Oceanographic and Limnological Research, Haifa, Israel. Lithognathus mormyrus
Lithognathus mormyrus		 cDNA Array spotted DNA/cDNA, IOLR_Lithognathus mormyrus_4608_v1.0, The array is printed on a 2.5 x 7.5 cm glass (GAPS II slides, Corning) on an area less than 6 x 2 cm. The grid system includes 4 x 12 sub-arrays, each containing 14 rows and 14 columns, a total of 9408 spots.
40 GPL8143 IOLR Lithognathus mormyrus 4608 v2.0 1,152 Israel Oceanographic and Limnological Research 2009-02-02 Moshe Tom's laboratory - Israel Oceanographic and Limnological Research, Haifa, Israel. Lithognathus mormyrus
Lithognathus mormyrus		 cDNA Array spotted DNA/cDNA, IOLR Lithognathus mormyrus 4608 v2.0, Two identical arrays were printed on one 2.5 x 7.5 cm glass (GAPS II slides, Corning) on an area less than 6 x 2 cm. The grid system of each arrray includes 4 x 6 sub-arrays, each containing 9 rows and 15 columns, a total of 1620 unique spots in duplicates, totaling 3240 spots. Not all the spots contained usable DNA.
«      1   |   2   |   3   |   4      »      
DBCLS | Site Policies | Contact Us