Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)
  Primates
(37)
  Rodents
(1,748)
  Mammals
(295)
  Vertebrates
(402)
  Invertebrates
(1,004)
  Plants
(2,170)
  Bacteria
(1,636)
  Viruses
(78)
  Phages
(8)
  Unclassified
(399)
  All
(11,528)
 
  SAGE NlaIII
(9)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(77)
  Oligo Array
(224)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(402)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
61 GPL4809 CSIRO Cane Toad 5.5k cDNA array 5,472 CSIRO Plant Industry 2007-02-05 CSIRO Plant Industry/CSIRO Entomology Bufo marinus
Bufo marinus
cDNA Array spotted DNA/cDNA, CSIRO Cane Toad 5.5k cDNA array, 5472 spot cane toad array
62 GPL1744 Chicken_Neuroendocrine_System_5K 7,200 University of Maryland 2004-12-10 Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, Chicken_Neuroendocrine_System_5K, Spotted amplified cDNA array on glass. Produced with cDNA clones expressed in the chicken neuroendocrine system. Tissues used to produced the cDNA library included the hypothalamus, anterior pituitary gland, and pineal gland. 7200 spots Keywords = spotted Keywords = cDNA
63 GPL4585 Chicken Immune Sytem-Specific Microarray Version 2 804 University of Guelph 2006-11-23 University of Guelph Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, Chicken Immune Sytem-Specific Microarray Version 2 ,
64 GPL4581 Chicken Immune System-Specific Microarray 134 University of Guelph 2006-11-21 University of Guelph Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, Chicken Immune System-Specific Microarray,
65 GPL3265 Chicken cDNA DDMET 1700 array version 1.0 1,728 INRA 2005-12-19 IFR140 - Ouest Genopole Transcriptome plateform, UMR6061, UMR GA, Rennes Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, Chicken cDNA DDMET 1700 array version 1.0, This set includes 195 differential display cDNA products from lean and fat chickens, 128 metabolism specific cDNAs, 2 fluorescent oligonucleotide (TagF and TagR, Eurogentec) control probes and 3 ready-to-spot PCR products from Arabidopsis thaliana (corresponding to RUBISCO activase (RCA), root cap 1 (RCP1) and papain-type cysteine endopeptidase (XCP2), Stratagene) at 3 different concentrations (10, 40 and 80 ng/µl). We spotted all the probes in triplicate, except control probes in duplicate, resulting in 1728 spots.
66 GPL3731 Chick Pineal 2006 8,084 Texas A&M University 2006-05-05 Laboratory for Functional Genomics, Department of Biology, Texas A&M University, College Station, TX 77843 Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, Chick Pineal 2006,
67 GPL1289 Chick Pineal 2004 9,053 Texas A&M University 2004-06-14 Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, Chick Pineal 2004, The cDNA microarrays were prepared based upon approximately 4,500 PCR products from each of the two chicken pineal cDNA libraries constructed, for a total of ~9,000 ESTs. Briefly, the cDNA in plasmids from each library were PCR amplified using flanking primers (SK and T7), purified by ethanol precipitation using ammonium acetate, and placed in the wells of 96 well plates at a concentration of 50 ug/ml in 3X SSC. A GeneMachines OmniGrid microarrayer equipped with 8 Telechem SMP3 pins was used to spot the samples onto poly-L-lysine coated slides (CEL Associates). Duplicate 100 micron diameter spots were placed at intervals of 190 microns (center to center). Slides were printed in batches of 50–100. Printing was accomplished at 70 C and 60% humidity. The OmniGrid’s operating software used information on the position of the individual clones within the 96-well sample plates and the order in which the plates were used to create a file describing the position of each cDNA clone on the array for later analysis. Slides were stored desiccated at room temperature until their subsequent use. Prior to hybridization, the dried spots were hydrated gently over a steaming water bath, snap dried, and the DNA was UV cross-linked using a Stratalinker (Stratagene). Keywords = chick pineal gland Keywords = circadian oscillator
68 GPL13225 cGRASP Salmonid array, 32K cDNA, version 2, 02/08 33,696 The University of Victoria 2011-02-25 cGRASP - University of Victoria Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar
cDNA Array spotted DNA/cDNA, cGRASP Salmonid array, 32K cDNA, version 2, 02/08,
69 GPL8904 cGRASP Salmonid array, 32K cDNA, version 1, February 2009 33,696 Fisheries and Oceans Canada 2009-07-22 Consortium for Genomic Research on All Salmon Project Oncorhynchus mykiss,Salmo salar
Oncorhynchus mykiss,Salmo salar
cDNA Array spotted DNA/cDNA, cGRASP Salmonid array, 32K cDNA, version 1, February 2009, 32k Salmonid cDNA microarray from cGRASP including features primarily from Atlantic salmon and rainbow trout.
70 GPL6260 cGRASP Salmon 16k cDNA array 17,328 Université LAVAL 2007-12-10 cGRASP (consortium for Genomic Research on All Salmon Project) Salmo salar
Salmo salar
cDNA Array spotted DNA/cDNA, cGRASP Salmon 16k cDNA array,
71 GPL10096 cGRASP 32K (Salmonid) cDNA - Release Date 02/08 33,696 University Laval 2010-02-23 cGRASP - University British Columbia Salmo salar
Salmo salar
cDNA Array spotted DNA/cDNA, cGRASP 32K (Salmonid) cDNA - Release Date 02/08, Described in A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. Koop et al., BMC Genomics 2008 Nov 17;9:545 Annotation file, see: http://web.uvic.ca/grasp/microarray/32KArrayData_IE007/32KcDNA_data.html
72 GPL3735 AURATUS: The goldfish environmental genomics project v1.0 19,200 University of New Brunswick 2006-05-08 University of Liverpool; Laboratory for Environmental Gene Regulation (LEGR); http://legr.liv.ac.uk/carpbase/index.htm Carassius auratus,Cyprinus carpio
Carassius auratus,Cyprinus carpio
cDNA Array spotted DNA/cDNA, AURATUS: The goldfish environmental genomics project v1.0,
73 GPL7056 AURATUS: The goldfish environmental genomics project 17K array v1.1 17,328 University of Ottawa 2008-07-16 University of Liverpool; Laboratory for Environmental Gene Regulation (LEGR) Carassius auratus,Cyprinus carpio
Carassius auratus,Cyprinus carpio
cDNA Array spotted DNA/cDNA, AURATUS: The goldfish environmental genomics project 17K array v1.1,
74 GPL5673 ARK-Genomics G. gallus 13K v4.0 27,648 ARK-Genomics@Roslin Institute 2007-07-26 ARK-Genomics, Roslin Institute, Roslin, Midlothian, EH25 9PS, United Kingdom Gallus gallus
Gallus gallus
cDNA Array spotted DNA/cDNA, ARK-Genomics G. gallus 13K v4.0, This is a chicken multi-tissue cDNA microarray with 12752 elements. It comprises clones from chicken EST collections generated by BBSRC, University of Delaware and the Fred Hutchinson Cancer Research Center. Sequence information is available from GenBank for all features on the array.
75 GPL10126 AQUAFIRST_seabream_18K_Ver1 (condensed) 20,217 NUI Galway 2010-03-03 Richard Reinhardt, MPI Molecular Genetics, Ihnestrasse 63-73, D-14195 Berlin-Dahlem, Germany Sparus aurata
Sparus aurata
cDNA Array spotted DNA/cDNA, AQUAFIRST_seabream_18K_Ver1 (condensed), The Platform data table reflects a condensed representation of the array's replicate features.
76 GPL8467 AQUAFIRST_seabream_18K_Ver1 38,976 NUI Galway 2009-04-22 Richard Reinhardt, MPI Molecular Genetics, Ihnestrasse 63-73, D-14195 Berlin-Dahlem, Germany Sparus aurata
Sparus aurata
cDNA Array spotted DNA/cDNA, AQUAFIRST_seabream_18K_Ver1,
77 GPL3650 AGENAE_TroutGeneric2_9216 9,216 INRA 2006-04-12 AGENAE Microarray Facility Oncorhynchus mykiss
Oncorhynchus mykiss
cDNA Array spotted DNA/cDNA, AGENAE_TroutGeneric2_9216, spotted DNA/cDNA
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