Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(40)		   cDNA Array
(102)		   Oligo Array
(1,054)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(67)		   Other
(0)		   All
(1,263)		  
  brain
(12)		   blood
(274)		   connective
(420)		   reproductive
(0)		   muscular
(0)		   digestive
(1)		   liver
(0)		   lung
(28)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(1)		   unclassified
(527)		   all
(1,263)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1241 GSM108050 Expression of CfMNPV select ORFs, 6 hpi, Expt. 1 192 University of Guelph 2006-05-05 [Oligo Array] Yang et. al. Oligoarray of CfMNPV select ORFs (GPL3719) mixed Choristoneura fumiferana MNPV
Choristoneura fumiferana MNPV		 unclassified source_name:Cy5-labeled viral genomic DNA Cy3-labeled cDNA title:Expression of CfMNPV select ORFs, 6 hpi, Expt. 1 description:Oligonucleotide-based two-channel DNA microarray was used for characterization of temporal gene expression profiles of select CfMNPV genes representing all four temporal classes. We adapted the DNA normalization protocol using CfMNPV vgDNA as a reference with microarray chips containing oligonucleotide probes for 23 select CfMNPV ORFs and their complements.
1242 GSM108049 Expression of CfMNPV select ORFs, 3 hpi, Expt. 1 192 University of Guelph 2006-05-05 [Oligo Array] Yang et. al. Oligoarray of CfMNPV select ORFs (GPL3719) mixed Choristoneura fumiferana MNPV
Choristoneura fumiferana MNPV		 unclassified source_name:Cy5-labeled viral genomic DNA Cy3-labeled cDNA title:Expression of CfMNPV select ORFs, 3 hpi, Expt. 1 description:Oligonucleotide-based two-channel DNA microarray was used for characterization of temporal gene expression profiles of select CfMNPV genes representing all four temporal classes. We adapted the DNA normalization protocol using CfMNPV vgDNA as a reference with microarray chips containing oligonucleotide probes for 23 select CfMNPV ORFs and their complements.
1243 GSM107978 Expression of CfMNPV select ORFs, 0 hpi, Expt. 1 192 University of Guelph 2006-05-04 [Oligo Array] Yang et. al. Oligoarray of CfMNPV select ORFs (GPL3719) mixed Choristoneura fumiferana MNPV
Choristoneura fumiferana MNPV		 unclassified source_name:Cy5-labeled viral genomic DNA Cy3-labeled cDNA title:Expression of CfMNPV select ORFs, 0 hpi, Expt. 1 description:Oligonucleotide-based two-channel DNA microarray was used for characterization of temporal gene expression profiles of select CfMNPV genes representing all four temporal classes. We adapted the DNA normalization protocol using CfMNPV vgDNA as a reference with microarray chips containing oligonucleotide probes for 23 select CfMNPV ORFs and their complements.
1244 GSM1020249 mRNA-seq from cells infected with HCMV for 72hr, replicate 0 UCSF 2012-10-16 [HT Sequencing] Illumina HiSeq 2000 (Human herpesvirus 5) (GPL16186) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, 72hr
1245 GSM1020248 mRNA-seq from cells infected with HCMV for 24hr, replicate 0 UCSF 2012-10-16 [HT Sequencing] Illumina HiSeq 2000 (Human herpesvirus 5) (GPL16186) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, 24hr
1246 GSM1020247 mRNA-seq from cells infected with HCMV for 5hr, replicate 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, 5hr
1247 GSM1020246 mRNA-seq from cells infected with HCMV for 72hr 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, 72hr
1248 GSM1020245 mRNA-seq from cells infected with HCMV for 24hr 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, 24hr
1249 GSM1020244 mRNA-seq from cells infected with HCMV for 5hr 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, 5hr
1250 GSM1020243 Footprints from cells infected with HCMV for 72hr, no drug pretreatment 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, none, 72hr
1251 GSM1020242 Footprints from cells infected with HCMV for 5hr, no drug pretreatment 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, none, 5hr
1252 GSM1020241 Footprints from cells infected with HCMV for 72hr, pretreated with LTM 0 UCSF 2012-10-16 [HT Sequencing] Illumina HiSeq 2000 (Human herpesvirus 5) (GPL16186) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, LTM, 72hr
1253 GSM1020240 Footprints from cells infected with HCMV for 5hr, pretreated with LTM 0 UCSF 2012-10-16 [HT Sequencing] Illumina HiSeq 2000 (Human herpesvirus 5) (GPL16186) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, LTM, 5hr
1254 GSM1020239 Footprints from cells infected with HCMV for 72hr, pretreated with Harringtonine 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, Harringtonine, 72hr
1255 GSM1020238 Footprints from cells infected with HCMV for 5hr, pretreated with Harringtonine 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, Harringtonine, 5hr
1256 GSM1020237 Footprints from cells infected with HCMV for 72hr, pretreated with cycloheximide, replicate 0 UCSF 2012-10-16 [HT Sequencing] Illumina HiSeq 2000 (Human herpesvirus 5) (GPL16186) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, cycloheximide, 72hr
1257 GSM1020236 Footprints from cells infected with HCMV for 72hr, pretreated with cycloheximide 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, cycloheximide, 72hr
1258 GSM1020235 Footprints from cells infected with HCMV for 24hr, pretreated with cycloheximide 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, cycloheximide, 24hr
1259 GSM1020234 Footprints from cells infected with HCMV for 5hr, pretreated with cycloheximide 0 UCSF 2012-10-16 [HT Sequencing] Illumina Genome Analyzer II (Human herpesvirus 5) (GPL16185) SRA Human herpesvirus 5
Human herpesvirus 5		 skin Human fibroblasts infected with HCMV, cycloheximide, 5hr
1260 GSM1006712 Dcr2[R416X]-IIV6 0 CNRS 2012-09-19 [HT Sequencing] Illumina HiSeq 2000 (Invertebrate iridescent virus 6) (GPL16081) SRA Invertebrate iridescent virus 6
Invertebrate iridescent virus 6		 unclassified source_name:Adult flies title:Dcr2[R416X]-IIV6 description:IIV6 infected Drosophila adult Dcr2 mutant flies
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