Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(18)
  GeneChip
(809)
  Tiling Array
(1,310)
  cDNA Array
(2,770)
  Oligo Array
(5,679)
  Bead Array
(210)
  Protein Array
(1)
  Antibody
(28)
  RT-PCR
(209)
  HT-Seq
(1,710)
  Other
(187)
  All
(13,032)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL15781 YaleLu Mouse miRNA v1.0 582 Yale University 2012-07-10 Jun, Lu Mus musculus
Mus musculus
Bead Array oligonucleotide beads, YaleLu Mouse miRNA v1.0,
2 GPL8081 WU Mouse_Illumina_46k_v6-1.1 46,629 Children's Hospital, Boston 2009-01-15 Illumina Mus musculus
Mus musculus
Bead Array oligonucleotide beads, WU Mouse_Illumina_46k_v6-1.1, Same as platform GPL6105.
3 GPL6171 Wistar Illumina Human V6 Array 46,713 The Wistar Institute 2007-11-20 Illumina Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Wistar Illumina Human V6 Array,
4 GPL7868 VUmc/Illumina Sentrix MouseRef8 v1.1 24,611 VU University Medical Center 2008-12-18 Illumina Mus musculus
Mus musculus
Bead Array oligonucleotide beads, VUmc/Illumina Sentrix MouseRef8 v1.1, Illumina Sentrix MouseRef-8 ServiceXS Beadstudio output list Similar to GPL6103
5 GPL6428 University of Missouri Illumina mouseRef-8 23K 23,189 NCBI/NLM/NIH 2008-01-28 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, University of Missouri Illumina mouseRef-8 23K, The Mouse-8 BeadChip can be used to study expression of over 24,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 8 samples in parallel on a single BeadChip.
6 GPL8237 University of Cambridge/Illumina Sentrix Mouse-6 Expression BeadChip v1 46,147 Genentech, Inc. 2009-03-02 Illumina Mus musculus
Mus musculus
Bead Array oligonucleotide beads, University of Cambridge/Illumina Sentrix Mouse-6 Expression BeadChip v1, Data table column 'Refseq_id' lists all Refseq_ids assigned to a given probe based on improved annotations described at http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html. Data table column 'Refseq_id_used' reports a unique representative Refseq ID per probe (required for one aspect of the analysis of GEO Series GSE15057).
7 GPL8239 University of Cambridge/Bead-based microRNA profiling platform version 4 359 Genentech, Inc. 2009-03-02 Luminex Mus musculus
Mus musculus
Bead Array oligonucleotide beads, University of Cambridge/Bead-based microRNA profiling platform version 4,
8 GPL13302 University at Buffalo Illumina MouseWG-6 v2.0 expression beadchip (Gene version) 30,854 University at Buffalo 2011-03-21 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, University at Buffalo Illumina MouseWG-6 v2.0 expression beadchip (Gene version),
9 GPL8649 Univ of Montreal Illumina ratRef-12 v1.0 expression beadchip 22,226 Université de Montréal 2009-06-04 Illumina Inc Rattus norvegicus
Rattus norvegicus
Bead Array oligonucleotide beads, Univ of Montreal Illumina ratRef-12 v1.0 expression beadchip, The RatRef-12 Expression BeadChip includes twelve genome-scale, gene expression microarrays built using Illumina’s multi-sample Array of Arrays format. BeadChip content (22,226 probes per array) was selected from theNational Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database.
10 GPL4042 UAF Arctic Ground Squirrel Illumina BeadArray 2A 707 University of Alaska Fairbanks 2006-07-29 Illumina unidentified
unidentified
Bead Array oligonucleotide beads, UAF Arctic Ground Squirrel Illumina BeadArray 2A, This array (2A) contains the second 707 genes designed from the mixed sequences of three close-related ground squirrel species: golden-mantled ground squirrel; thirteen-lined ground squirrel; arctic ground squirrel. Two 50bps probes were designed for each gene.
11 GPL4041 UAF Arctic Ground Squirrel Illumina BeadArray 1A 707 University of Alaska Fairbanks 2006-07-29 Illumina unidentified
unidentified
Bead Array oligonucleotide beads, UAF Arctic Ground Squirrel Illumina BeadArray 1A, This array (1A) contains the first 707 genes designed from the mixed sequences of three close-related ground squirrel species: golden-mantled ground squirrel; thirteen-lined ground squirrel; arctic ground squirrel. Two 50bps probes were designed for each gene.
12 GPL13508 Sentrix® Linkage V Panel BeadChip 6,056 Leiden University Medical Center 2011-05-09 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Sentrix® Linkage V Panel BeadChip, Illumina's SNP-based Linkage IV Panel is a marker map for genetic disease studies. The panel contains over 6000 highly informative SNP markers distributed evenly across the human genome and delivering high information optimized for linkage mapping studies.
13 GPL3896 Sentrix® Linkage IV Panel BeadChip 5,858 Leiden University Medical Center 2006-06-21 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Sentrix® Linkage IV Panel BeadChip, Illumina's SNP-based Linkage IV Panel is a marker map for genetic disease studies. The panel contains over 6000 highly informative SNP markers distributed evenly across the human genome and delivering high information optimized for linkage mapping studies.
14 GPL2725 Sentrix® HumanRef-8RD BeadChip 24,136 Illumina Inc. 2005-08-05 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Sentrix® HumanRef-8RD BeadChip , The Sentrix® HumanRef-8RD BeadChip is an early-access version of a multi-sample, gene expression microarray with content derived from the NCBI RefSeq database. Designed to interrogate over 23,000 transcripts per array, probe content was optimized prior to commercial release and the first-generation research product (8RD) was subsequently replaced by the HumanRef-8 BeadChip. Researchers can generate genome-wide expression profiles for eight samples in parallel on the BeadChip. Each array on the BeadChip is composed of 3-micron features with 30-fold average feature redundancy. Every features is quality-controlled during array manufacturing. Probes are fully screened, full-length 50-mers. Assay requires 50-100ng of total RNA input.
15 GPL4865 Sentrix MouseRef-8 Expression BeadChip (Target ID) 24,048 Illumina Inc. 2007-02-13 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Sentrix MouseRef-8 Expression BeadChip (Target ID), The Sentrix MouseRef-8 BeadChip can be used to study expression of approximately 24,000 well-annotated transcripts from the NCBI RefSeq database. Researchers can generate whole-genome expression profiles for 8 samples in parallel on a single BeadChip. The array is composed of 3 micron features with average feature redundancy of 30-fold. All features are quality controlled by sequential hybridizations process called array decoding. Probes are fully screened, full-length 50-mers. Assay requires 50-100ng of total RNA input.
16 GPL6422 Sentrix MouseRef-8 Expression BeadChip 24,048 NCBI/NLM/NIH 2008-01-25 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Sentrix MouseRef-8 Expression BeadChip, The Sentrix MouseRef-8 BeadChip can be used to study expression of approximately 24,000 well-annotated transcripts from the NCBI RefSeq database. Researchers can generate whole-genome expression profiles for 8 samples in parallel on a single BeadChip. The array is composed of 3 micron features with average feature redundancy of 30-fold. All features are quality controlled by sequential hybridizations process called array decoding. Probes are fully screened, full-length 50-mers. Assay requires 50-100ng of total RNA input.
17 GPL7108 Sentrix Mouse-6 Expression BeadChip (3) 9,587 NCBI/NLM/NIH 2008-07-29 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Sentrix Mouse-6 Expression BeadChip (3) ,
18 GPL6731 Sentrix Mouse-6 Expression BeadChip (2) 47,425 NCBI/NLM/NIH 2008-04-11 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Sentrix Mouse-6 Expression BeadChip (2) ,
19 GPL4234 Sentrix Mouse-6 Expression BeadChip 46,133 Illumina Inc. 2006-08-28 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Sentrix Mouse-6 Expression BeadChip, The Sentrix Mouse-6 BeadChip can be used to study expression of over 47,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Each array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by a sequential hybridization process called array decoding. The probes are fully screened all-full-length 50-mers and the assay requires 50-100ng of total RNA input.
20 GPL4055 Sentrix Mouse-6 Expression BeadChip 46,116 NCBI/NLM/NIH 2006-08-02 Illumina Inc. Mus musculus
Mus musculus
Bead Array oligonucleotide beads, Sentrix Mouse-6 Expression BeadChip, The Sentrix Mouse-6 BeadChip can be used to study expression of over 47,000 transcripts. Array content is based largely on the MEEBO set. The MEEBO content represented on the BeadChips is supplemented with more than 11,000 probes for additional targets from RIKEN FANTOM2 and the NCBI RefSeq transcript databases. Researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Array is composed of 3 micron features with average feature redundancy of 30-fold. All features are QCed by sequential hybridizations process called array decoding. Probes are fully screened all-full-length 50-mers. Assay requires 50-100ng of total RNA input.
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