Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,747)		   Primates
(38)		   Rodents
(1,772)		   Mammals
(300)		   Vertebrates
(408)		   Invertebrates
(1,027)		   Plants
(2,220)		   Bacteria
(1,678)		   Viruses
(78)		   Phages
(8)		   Unclassified
(422)		   All
(11,747)		  
  SAGE NlaIII
(83)		   SAGE RsaI
(1)		   SAGE Sau3A
(5)		   MPSS
(17)		   GeneChip
(702)		   Tiling Array
(1,270)		   cDNA Array
(2,724)		   Oligo Array
(5,129)		   Bead Array
(185)		   Protein Array
(1)		   Antibody
(23)		   RT-PCR
(153)		   HT-Seq
(1,305)		   Other
(141)		   All
(11,747)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
101 GPL16107 Illumina HumanOmni2.5-4v1_B BeadChip [hg19] 2,303,277 Genentech, Inc. 2012-09-26 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanOmni2.5-4v1_B BeadChip [hg19], Please see http://www.illumina.com/technology/infinium_hd_assay.ilmn
102 GPL16110 Illumina HumanOmni2.5 BeadChip (hg19) 2,443,179 Mount Sinai Hospital 2012-09-27 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanOmni2.5 BeadChip (hg19), build: hg19
103 GPL16573 Illumina HumanOmni1-Quad BeadChip (15004098) 1,216,822 Research Institute of Physico-Chemical Medicine 2013-01-30 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanOmni1-Quad BeadChip (15004098), includes > 72,000 CPGs (probes that start with kgp) from the 1000 Genomes Project that are not in dbSNP as of 01/30/2013, catalog # 15004098
104 GPL8882 Illumina HumanOmni1-Quad BeadChip 1,140,419 NCBI/NLM/NIH 2009-07-19 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanOmni1-Quad BeadChip,
105 GPL9969 Illumina HumanOmni1 Genotyping BeadChip 1,140,419 CNIO 2010-01-25 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanOmni1 Genotyping BeadChip,
106 GPL16304 Illumina HumanMethylation450 BeadChip [UBC enhanced annotation v1.0] 485,512 University of British Columbia 2012-11-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanMethylation450 BeadChip [UBC enhanced annotation v1.0],
107 GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) 485,577 Illumina Inc. 2011-05-13 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482), 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore
108 GPL8490 Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2) 27,578 Illumina Inc. 2009-04-27 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2), HumanMethylation27 DNA Analysis BeadChip allows researchers to interrogate 27,578 highly informative CpG sites per sample at single-nucleotide resolution. This 12-sample BeadChip features content derived from the well-annotated NCBI CCDS database (Genome Build 36) and is supplemented with more than 1,000 cancer-related genes described in published literature. Probe content has been enriched to deeply cover more than 150 well-established cancer genes known to show differential methylation patterns. HumanMethylation27 BeadChip content also targets the promoter regions of 110 miRNA genes.
109 GPL14951 Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip 29,377 NCBI/NLM/NIH 2011-12-02 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip,
110 GPL13938 Illumina HumanHT-12 WG-DASL V4.0 expression beadchip 29,285 Illumina Inc. 2011-07-18 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 WG-DASL V4.0 expression beadchip,
111 GPL10904 Illumina HumanHT-12 V4.0 expression beadchip (gene symbol) 34,695 NCBI/NLM/NIH 2010-09-10 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V4.0 expression beadchip (gene symbol), The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments. The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants. Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
112 GPL13475 Illumina HumanHT-12 V4.0 expression beadchip 47,323 NCBI/NLM/NIH 2011-04-29 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V4.0 expression beadchip, The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments. The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants. Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
113 GPL10558 Illumina HumanHT-12 V4.0 expression beadchip 47,231 Illumina Inc. 2010-06-17 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V4.0 expression beadchip, The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments. The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants. Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
114 GPL6947 Illumina HumanHT-12 V3.0 expression beadchip 48,803 Illumina Inc. 2008-06-10 Illumina Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V3.0 expression beadchip, The HumanHT-12 V3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22). Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
115 GPL15389 Illumina HumanHT-12 V3.0 expression beadchip 37,846 Mayo Clinic 2012-03-30 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHT-12 V3.0 expression beadchip,
116 GPL6987 Illumina HumanHap650Yv3 Genotyping BeadChip (HumanHap650Yv3_A) 660,918 Illumina Inc. 2008-06-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHap650Yv3 Genotyping BeadChip (HumanHap650Yv3_A), over 655,000 tag SNP markers derived from the International HapMap Project
117 GPL14932 Illumina HumanHap650Yv2 Genotyping BeadChip (HumanHap650Y_v2-0_GenotypingBC_11237679_A) 662,841 Tanz Centre for Neurodegenerative Diseases 2011-11-26 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHap650Yv2 Genotyping BeadChip (HumanHap650Y_v2-0_GenotypingBC_11237679_A), Descriptor File Name(s),HumanHap650Y_v2-0_GenotypingBC_11237679_A.bpm Assay Format,Infinium II SNP Count,662841
118 GPL6981 Illumina HumanHap550v3 Genotyping BeadChip (HumanHap550v3_B) 561,466 Illumina Inc. 2008-06-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHap550v3 Genotyping BeadChip (HumanHap550v3_B), over 555,000 tag SNP markers derived from the International HapMap Project
119 GPL6982 Illumina HumanHap550-Duov3 Genotyping BeadChip (HumanHap550-2v3_B) 561,466 Illumina Inc. 2008-06-20 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHap550-Duov3 Genotyping BeadChip (HumanHap550-2v3_B), over 555,000 tag SNP markers derived from the International HapMap Project
120 GPL6434 Illumina HumanHap550 Genotyping BeadChip v3 561,466 NCBI/NLM/NIH 2008-01-29 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanHap550 Genotyping BeadChip v3, Version 3, Illumina Sentrix HumanHap550 Genotyping BeadChip
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