Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(18)
  GeneChip
(809)
  Tiling Array
(1,310)
  cDNA Array
(2,770)
  Oligo Array
(5,679)
  Bead Array
(210)
  Protein Array
(1)
  Antibody
(28)
  RT-PCR
(209)
  HT-Seq
(1,710)
  Other
(187)
  All
(13,032)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
101 GPL6883 Illumina HumanRef-8 v3.0 expression beadchip 24,526 Illumina Inc. 2008-05-21 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanRef-8 v3.0 expression beadchip, The HumanRef-8 v3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22). Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
102 GPL6104 Illumina humanRef-8 v2.0 expression beadchip 22,185 Illumina Inc. 2007-11-08 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina humanRef-8 v2.0 expression beadchip, Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 22,000 transcript probes using the HumanRef-8 v2 beadchip. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
103 GPL6255 Illumina humanRef-8 v2.0 expression beadchip 20,589 NCBI/NLM/NIH 2007-12-07 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina humanRef-8 v2.0 expression beadchip,
104 GPL14186 Illumina HumanRef-8 v2 Expression Beadchip 1699538181 22,184 National University of Singapore 2011-08-24 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanRef-8 v2 Expression Beadchip 1699538181, Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 22,000 transcript probes using the HumanRef-8 v2 beadchip. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
105 GPL6098 Illumina humanRef-8 v1.0 expression beadchip 24,385 Illumina Inc. 2007-11-08 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina humanRef-8 v1.0 expression beadchip, The HumanRef-8 Expression BeadChip contains eight arrays of > 24,000 probes derived from the RefSeq database. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
106 GPL7192 Illumina HumanRef-8 Expression BeadChip 24,365 NCI 2008-08-21 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanRef-8 Expression BeadChip, The Sentrix® HumanRef-8 BeadChip can be used to study expression of over 23,000 human transcripts from the NCBI RefSeq database. Researchers can generate whole-genome expression profiles for 8 samples in parallel on a single BeadChip. The array is composed of 3 micron features with average feature redundancy of 30-fold. All features are quality controlled by sequential hybridizations process called array decoding. Probes are fully screened, full-length 50-mers. Assay requires 50-100ng of total RNA input.
107 GPL6790 Illumina HumanRef-6 v2.0 expression beadchip 46,718 NCBI/NLM/NIH 2008-04-28 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanRef-6 v2.0 expression beadchip,
108 GPL7306 Illumina HumanRef-6 Expression BeadChip 47,292 NCI 2008-09-15 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanRef-6 Expression BeadChip, The Sentrix Human-6 BeadChip can be used to study expression of over 47,000 human transcripts. Researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by sequential hybridizations process called array decoding. Probes are fully screened all-full-length 50-mers. Assay requires 50-100ng of total RNA input. Array content is based on RefSeq and additional space is occupied by targets selected from Unigene build 163 and Gnomon databases.
109 GPL14157 Illumina HumanOmni5-Quad BeadChip (HumanOmni5-4v1_B) 0 IDIBELL 2011-08-17 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni5-Quad BeadChip (HumanOmni5-4v1_B),
110 GPL13314 Illumina HumanOmni2.5-Quad BeadChip 2,450,000 NCBI/NLM/NIH 2011-03-22 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni2.5-Quad BeadChip, common and rare SNP content from the 1kGP (MAF>2.5%) for diverse world populations build: hg18 =optimized tag SNP content from recently released 1000 Genomes Project pilot data
111 GPL16104 Illumina HumanOmni2.5-8 BeadChip 2,379,855 NCBI/NLM/NIH 2012-09-25 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni2.5-8 BeadChip, This array is based on build 37
112 GPL16107 Illumina HumanOmni2.5-4v1_B BeadChip [hg19] 2,303,277 Genentech, Inc. 2012-09-26 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni2.5-4v1_B BeadChip [hg19], Please see http://www.illumina.com/technology/infinium_hd_assay.ilmn
113 GPL16110 Illumina HumanOmni2.5 BeadChip (hg19) 2,443,179 Mount Sinai Hospital 2012-09-27 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni2.5 BeadChip (hg19), build: hg19
114 GPL16573 Illumina HumanOmni1-Quad BeadChip (15004098) 1,216,822 Research Institute of Physico-Chemical Medicine 2013-01-30 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni1-Quad BeadChip (15004098), includes > 72,000 CPGs (probes that start with kgp) from the 1000 Genomes Project that are not in dbSNP as of 01/30/2013, catalog # 15004098
115 GPL17539 Illumina HumanOmni1-Quad BeadChip (4v1MultiUse_15014141_B) 1,164,123 "G. d'Annunzio" University Foundation 2013-08-07 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni1-Quad BeadChip (4v1MultiUse_15014141_B),
116 GPL8882 Illumina HumanOmni1-Quad BeadChip 1,140,419 NCBI/NLM/NIH 2009-07-19 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni1-Quad BeadChip,
117 GPL9969 Illumina HumanOmni1 Genotyping BeadChip 1,140,419 CNIO 2010-01-25 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanOmni1 Genotyping BeadChip,
118 GPL16304 Illumina HumanMethylation450 BeadChip [UBC enhanced annotation v1.0] 485,512 University of British Columbia 2012-11-20 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanMethylation450 BeadChip [UBC enhanced annotation v1.0],
119 GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) 485,577 Illumina Inc. 2011-05-13 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482), 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore
120 GPL8490 Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2) 27,578 Illumina Inc. 2009-04-27 Illumina, Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2), HumanMethylation27 DNA Analysis BeadChip allows researchers to interrogate 27,578 highly informative CpG sites per sample at single-nucleotide resolution. This 12-sample BeadChip features content derived from the well-annotated NCBI CCDS database (Genome Build 36) and is supplemented with more than 1,000 cancer-related genes described in published literature. Probe content has been enriched to deeply cover more than 150 well-established cancer genes known to show differential methylation patterns. HumanMethylation27 BeadChip content also targets the promoter regions of 110 miRNA genes.
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