Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(836)
  Primates
(10)
  Rodents
(586)
  Mammals
(39)
  Vertebrates
(49)
  Invertebrates
(184)
  Plants
(231)
  Bacteria
(113)
  Viruses
(2)
  Phages
(0)
  Unclassified
(8)
  All
(2,065)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(784)
  Tiling Array
(153)
  cDNA Array
(103)
  Oligo Array
(509)
  Bead Array
(200)
  Protein Array
(0)
  Antibody
(1)
  RT-PCR
(16)
  HT-Seq
(286)
  Other
(11)
  All
(2,065)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
21 Comprehensive Long Span Paired-End-Tag Mapping Reveals Characteristic Patterns of Structural Variations in Epithelial Cancer Genomes (GSE26954) [HT Sequencing] AB SOLiD System 2.0 (Homo sapiens) (GPL9138) Genome Institute of Singapore 2011-01-29 Homo sapiens
Homo sapiens
23
(0 x 23)
3 8 12 by_platform
by_series
22 Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (GSE27394) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) UCSD 2011-02-17 Mus musculus
Mus musculus
23
(0 x 23)
23 by_platform
by_series
23 Multiplexed identification of the genomic targets of DNA-binding proteins (GSE27381) [HT Sequencing] Illumina Genome Analyzer II (Saccharomyces cerevisiae) (GPL9377) Washington University School of Medicine 2011-02-17 Saccharomyces cerevisiae
Saccharomyces cerevisiae
22
(0 x 22)
22 by_platform
by_series
24 Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (RNA-seq) (GSE27218) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) UCSD 2011-02-10 Mus musculus
Mus musculus
21
(0 x 21)
21 by_platform
by_series
25 Regulation of nucleosome landscape and transcription factor binding at enhancers by BRG1 (GSE26501) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) NIH 2011-01-07 Homo sapiens
Homo sapiens
20
(0 x 20)
6 14 by_platform
by_series
26 Small RNAs from Arabidopsis plants infected with CMV-∆2b (GSE27477) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) University of California Riverside 2011-02-23 Arabidopsis thaliana
Arabidopsis thaliana
20
(0 x 20)
20 by_platform
by_series
27 Extensive Chromatin Remodeling and Establishment of Transcription Factor 'Hotspots' during Early Adipogenesis (GSE27826) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) University of Southern Denmark 2011-03-08 Mus musculus
Mus musculus
20
(0 x 20)
20 by_platform
by_series
28 A Transcriptomic Atlas of Mouse Neocortical Layers (GSE27243) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) University of Oxford 2011-02-11 Mus musculus
Mus musculus
19
(0 x 19)
19 by_platform
by_series
29 Programmed fluctuations in sense/anti-sense transcript ratios drive sexual differentiation in Schizosaccharomyces pombe (GSE28113) [HT Sequencing] AB SOLiD System 3.0 (Schizosaccharomyces pombe) (GPL13315) University College London 2011-03-22 Schizosaccharomyces pombe
Schizosaccharomyces pombe
19
(0 x 19)
19 by_platform
by_series
30 Methylome analysis of 18 wild-type and mutant mouse ES, NP and MEF cells (GSE27468) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) UCL Cancer Institute 2011-02-23 Mus musculus
Mus musculus
18
(0 x 18)
6 6 6 by_platform
by_series
31 Profile of small RNA transcriptome during cortical development in the Rat (GSE27576) [HT Sequencing] Illumina genome Analyzer II (Rattus norvegicus) (GPL13235) Institute of Neurosciecne 2011-02-28 Rattus norvegicus
Rattus norvegicus
18
(0 x 18)
18 by_platform
by_series
32 Genome-wide maps of chromatin state in early erythroid precursors versus later, more differentiated erythroblasts. (GSE27893) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) Whitehead Institute 2011-03-10 Mus musculus
Mus musculus
18
(0 x 18)
18 by_platform
by_series
33 Functional analysis of Kap1 genomic recruitment (GSE27929) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) Stanford University 2011-03-14 Homo sapiens
Homo sapiens
17
(0 x 17)
2 13 2 by_platform
by_series
34 mRNA sequencing from ego-1(om84) and control L3, L4, and adult C. elegans hermaphrodites (GSE26579) [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) Stanford University 2011-01-12 Caenorhabditis elegans
Caenorhabditis elegans
16
(0 x 16)
16 by_platform
by_series
35 Enhancer Decommissioning by LSD1 During Embryonic Stem Cell Differentiation (ChIP-seq) (GSE27841) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute for Biomedical Research 2011-03-08 Mus musculus
Mus musculus
16
(0 x 16)
16 by_platform
by_series
36 Enhancer Decommissioning by LSD1 During Embryonic Stem Cell Differentiation (GSE27844) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute for Biomedical Research 2011-03-08 Mus musculus
Mus musculus
16
(0 x 16)
16 by_platform
by_series
37 mRNA-seq data of embryonic chicken digits (GSE28156) [HT Sequencing] Illumina Genome Analyzer (Gallus gallus) (GPL10223) Yale University 2011-03-24 Gallus gallus
Gallus gallus
16
(0 x 16)
16 by_platform
by_series
38 Patterns and mechanisms of ancestral histone protein inheritance in budding yeast (GSE28269) [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) The Hebrew University of Jerusalem 2011-03-30 Saccharomyces cerevisiae
Saccharomyces cerevisiae
16
(0 x 16)
2 14 by_platform
by_series
39 A comparative epigenomics approach reveals REST as a mediator of Polycomb reprogramming during neuronal differentiation (GSE27148) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Friedrich Miescher Institute for Biomedical Research 2011-02-08 Mus musculus
Mus musculus
15
(0 x 15)
5 6 4 by_platform
by_series
40 Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells (GSE27866) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Friedrich Miescher Institute for Biomedical Research 2011-03-09 Mus musculus
Mus musculus
15
(0 x 15)
6 2 7 by_platform
by_series
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