Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(806)		   Primates
(10)		   Rodents
(554)		   Mammals
(32)		   Vertebrates
(48)		   Invertebrates
(182)		   Plants
(225)		   Bacteria
(109)		   Viruses
(2)		   Phages
(0)		   Unclassified
(5)		   All
(1,980)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(749)		   Tiling Array
(149)		   cDNA Array
(102)		   Oligo Array
(489)		   Bead Array
(181)		   Protein Array
(0)		   Antibody
(1)		   RT-PCR
(14)		   HT-Seq
(284)		   Other
(10)		   All
(1,980)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
41 5'-monophosphate-independent small RNA sequencing from ego-1(om84) and control L3, L4, and adult C. elegans hermaphrodites (GSE26581) [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) Stanford University 2011-01-12 Caenorhabditis elegans
Caenorhabditis elegans		 14
(0 x 14) 		14 by_platform
by_series
42 Drosophila dKDM5/LID regulates H3K4me3 dynamics at the transcription start site of actively transcribed developmental genes (GSE27081) [HT Sequencing] Illumina Genome Analyzer II (Drosophila melanogaster) (GPL9061) IRB Barcelona 2011-02-04 Drosophila melanogaster
Drosophila melanogaster		 14
(0 x 14) 		14 by_platform
by_series
43 Target RNA repertoire of mouse Mili and Miwi proteins reveals piRNA biogenesis and Miwi function in spermiogenesis (GSE27623) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) University of Pennsylvania 2011-03-01 Mus musculus
Mus musculus		 14
(0 x 14) 		14 by_platform
by_series
44 Genome-wide analysis reveals unique regulation of transcription of Th2-specific genes by GATA3 (GSE28292) [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) Chiba University 2011-03-31 Mus musculus
Mus musculus		 14
(0 x 14) 		7 7 by_platform
by_series
45 Genome-Wide And Phase-Specific DNA-Binding Rhythms Of BMAL1 Control Circadian Output Functions In Mouse Liver (GSE26602) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) University of Cambridge Metabolic Research Laboratories 2011-01-13 Mus musculus
Mus musculus		 13
(0 x 13) 		13 by_platform
by_series
46 Dynamic hydroxymethylation of DNA marks differentiation-driven enhancers (GSE27436) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Université de Rennes 1 2011-02-22 Mus musculus
Mus musculus		 13
(0 x 13) 		5 8 by_platform
by_series
47 Unamplified Cap Analysis of Gene Expression on a single molecule sequencer (HeliScopeCAGE) (GSE28148) [HT Sequencing] Helicos Heliscope (Homo sapiens) (GPL13978) RIKEN 2011-03-24 Homo sapiens
Homo sapiens		 13
(0 x 13) 		10 3 by_platform
by_series
48 DNA methylation in the colon of Dnmt3b-induced and control mice (GSE26758) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Whitehead Institute 2011-01-20 Mus musculus
Mus musculus		 12
(0 x 12) 		12 by_platform
by_series
49 Integrative model of genomic factors for determining binding site selection by estrogen receptor alpha in MCF-7 cancer cells (GSE26831) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) Genome Institute of Singapore 2011-01-24 Homo sapiens
Homo sapiens		 12
(0 x 12) 		12 by_platform
by_series
50 DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha (GSE27584) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) UCSC ENCODE DCC 2011-03-01 Homo sapiens
Homo sapiens		 12
(0 x 12) 		1 1 1 1 1 3 4 by_platform
by_series
51 MiRNA expression profiles from adult mouse frontal cortex and hippocampus (GSE27979) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) University of Helsinki 2011-03-16 Mus musculus
Mus musculus		 12
(0 x 12) 		12 by_platform
by_series
52 Role of REST during neuronal differentiation (GSE27341) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Friedrich Miescher Institute for Biomedical Research 2011-02-16 Mus musculus
Mus musculus		 11
(0 x 11) 		5 6 by_platform
by_series
53 Deep sequencing reveals distinct patterns of DNA methylation and transcript isoform regulation in prostate cancer (GSE27619) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) University of Michigan 2011-03-01 Homo sapiens
Homo sapiens		 11
(0 x 11) 		5 6 by_platform
by_series
54 CBX3 Regulates Efficient RNA Processing Genome Wide (GSE28115) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) Ludwig Institute for Cancer Research 2011-03-22 Homo sapiens
Homo sapiens		 11
(0 x 11) 		11 by_platform
by_series
55 MNase digestion-sensitive nucleosomes in Saccharomyces cerevisiae (GSE26412) [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) Baylor College of Medicine 2011-01-03 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 10
(0 x 10) 		10 by_platform
by_series
56 LID ChIP-Seq in wild type, and H3K4me3 ChIP-Seq in wild type and lid RNAi Drosophila melanogaster (GSE27078) [HT Sequencing] Illumina Genome Analyzer II (Drosophila melanogaster) (GPL9061) IRB Barcelona 2011-02-04 Drosophila melanogaster
Drosophila melanogaster		 10
(0 x 10) 		10 by_platform
by_series
57 The Nucleosome Map of the Mammalian Liver (GSE26729) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) University of Pennsylvania 2011-01-19 Mus musculus
Mus musculus		 9
(0 x 9) 		9 by_platform
by_series
58 ORC Meta-peak generation (GSE27123) [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) Ontario Institute for Cancer Research 2011-02-07 Drosophila melanogaster
Drosophila melanogaster		 9
(0 x 9) 		9 by_platform
by_series
59 Deep sequencing analysis of human red blood cells (GSE27250) [HT Sequencing] 454 GS FLX (Homo sapiens) (GPL9186) Children's Hospital Zurich 2011-02-11 Homo sapiens
Homo sapiens		 9
(0 x 9) 		9 by_platform
by_series
60 DNA methylation analysis of prostate cancer cell lines and tissues using Next Generation Sequencing (GSE27618) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) University of Michigan 2011-03-01 Homo sapiens
Homo sapiens		 9
(0 x 9) 		5 4 by_platform
by_series
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