Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(10,583)		   blood
(30,578)		   connective
(12,519)		   reproductive
(8,009)		   muscular
(4,910)		   digestive
(7,795)		   liver
(23,572)		   lung
(6,574)		   urinary
(3,898)		   endo/exo-crine
(12,667)		   embryo
(3,693)		   adult aerial structure
(4,120)		   young aerial structure
(1,049)		   root
(1,088)		   meristem/growing tissue
(442)		   flower/sexual organ
(950)		   seed/fruit/grain
(824)		   pooled
(15,623)		   unclassified
(90,690)		   all
(239,584)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
301 GSM182374 dye-swap experiment between propagated callus and shoot 3 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot14 propagated callus2
302 GSM182363 dye-swap experiment between propagated callus and shoot 2 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue propagated callus 10 days old shoot5
303 GSM182362 dye-swap experiment between propagated callus and shoot 1 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot5 propagated callus
304 GSM182361 dye-swap experiment between primary callus and shoot 2 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue primary callus 10 days old shoot5
305 GSM182360 dye-swap experiment between primary callus and shoot 1 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot5 primary callus
306 GSM182394 dye-swap experiment between llaid-down shoot submarged in water for 24 hours and non-treated shoot 3 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot9 laid-down shoot submarged in water for 24 hours2
307 GSM182385 dye-swap experiment between laid-down shoot submarged in water for 6 hours and non-treated shoot 2 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue laid-down shoot submarged in water for 6 hours 10 days old shoot12
308 GSM182384 dye-swap experiment between laid-down shoot submarged in water for 6 hours and non-treated shoot 1 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot12 laid-down shoot submarged in water for 6 hours
309 GSM182387 dye-swap experiment between laid-down shoot submarged in water for 48 hours and non-treated shoot 2 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue laid-down shoot submarged in water for 48 hours 10 days old shoot12
310 GSM182386 dye-swap experiment between laid-down shoot submarged in water for 48 hours and non-treated shoot 1 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot12 laid-down shoot submarged in water for 48 hours
311 GSM182395 dye-swap experiment between laid-down shoot submarged in water for 24 hours and non-treated shoot 4 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue laid-down shoot submarged in water for 24 hours2 10 days old shoot9
312 GSM182401 dye-swap experiment between laid-down shoot submarged in water for 24 hour and non-treated shoot 2 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue shoot laid down for 24 hours 10 days old shoot10
313 GSM182393 dye-swap experiment between laid-down shoot submarged in water for 1 hour and non-treated shoot 2 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue laid-down shoot submarged in water for 1 hour 10 days old shoot10
314 GSM182392 dye-swap experiment between laid-down shoot submarged in water for 1 hour and non-treated shoot 1 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot10 laid-down shoot submarged in water for 1 hour
315 GSM182367 dye-swap experiment between green callus and shoot 2 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue green callus incubated on re-differential induced medium 10 days old shoot7
316 GSM182366 dye-swap experiment between green callus and shoot 1 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot7 green callus incubated on re-differential induced medium
317 GSM182371 dye-swap experiment between germination seed and shoot 4 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue germinated seed2 10 days old shoot8
318 GSM182370 dye-swap experiment between germination seed and shoot 3 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] Agilent-012106 Rice Oligo Microarray G4138A (Feature Number version) (GPL892) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot8 germinated seed2
319 GSM182355 dye-swap experiment between apical meristem and shoot 2 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue apical meristem 10 days old shoot5
320 GSM182354 dye-swap experiment between apical meristem and shoot 1 22,575 National Institute of Agrobiological Sciences 2007-04-16 [Oligo Array] RICE oligo microarray ver1 (GPL477) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group		 meristem/growing tissue 10 days old shoot5 apical meristem
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