Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(83)		   SAGE RsaI
(1)		   SAGE Sau3A
(5)		   MPSS
(17)		   GeneChip
(677)		   Tiling Array
(1,257)		   cDNA Array
(2,714)		   Oligo Array
(5,069)		   Bead Array
(183)		   Protein Array
(1)		   Antibody
(22)		   RT-PCR
(144)		   HT-Seq
(1,218)		   Other
(129)		   All
(11,528)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
41 GPL16426 SA Biosciences Mouse lung gene expression array 45 Indiana University School of Medicine-Northwest 2012-12-24 Qiagen/SA Biosciences Mus musculus
Mus musculus		 RT-PCR RT-PCR, SA Biosciences Mouse lung gene expression array, Quantitative reverse transcription real-time PCR (qRT-PCR)
42 GPL16577 Barbee Lab Drosophila Larval CNS miRNA RT-PCR Array 80 University of Denver 2013-01-31 Qiagen Drosophila melanogaster
Drosophila melanogaster		 RT-PCR RT-PCR, Barbee Lab Drosophila Larval CNS miRNA RT-PCR Array, RT-qPCR assay SYBR Green Primer assays for 79 miRNAs expressed in the third instar larval CNS
43 GPL11665 Mouse Immunology 384 StellARrayâ„¢ qPCR Array plates (# 00188202) 778 Imperial College London 2011-01-27 Lonza/Bar Harbor Biotechnology Mus musculus
Mus musculus		 RT-PCR RT-PCR, Mouse Immunology 384 StellARrayâ„¢ qPCR Array plates (# 00188202), This GEO Platform record represents two different plates, one custom made by Bar Harbor labs and another commercially available. This is designated by the 'plate' column in the Platform table below.
44 GPL15844 Lonza StellARay mouse cell cycle qPCR array 25 University of Michigan 2012-07-24 Lonza Mus musculus
Mus musculus		 RT-PCR RT-PCR, Lonza StellARay mouse cell cycle qPCR array, PCR assay for cell cycle-related genes.
45 GPL15766 Life Technologies murine miRNA expression assays Murine Megaplex pools A and B 522 Center for Medical Genetics 2012-07-04 Life Technologies Mus musculus
Mus musculus		 RT-PCR RT-PCR, Life Technologies murine miRNA expression assays Murine Megaplex pools A and B, PCR assay
46 GPL15765 Life Technologies Human miRNA expression assays 450-plex 448 Center for Medical Genetics 2012-07-04 Life Technologies Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Life Technologies Human miRNA expression assays 450-plex, PCR assay
47 GPL15513 Rodent TaqMan® Low Density miRNA Arrays A v2.0 (TLDA, Life Technologies) 381 Centenary Institute 2012-05-01 Life Technologies Mus musculus
Mus musculus		 RT-PCR RT-PCR, Rodent TaqMan® Low Density miRNA Arrays A v2.0 (TLDA, Life Technologies), RT-PCR quantification of mature microRNAs
48 GPL4473 GUELPH Bovine immune-endocrine microarray 720 University of Guelph 2006-10-22 Immunogenetics lab, Department of Pathobiology, Universitu of Guelph Bos taurus
Bos taurus		 RT-PCR spotted DNA/cDNA, GUELPH Bovine immune-endocrine microarray, The in-house microarray consists of 167 RT-PCR derived DNA fragments representing 167 ORFs from bovine. The DNA fragments are printed 4 times on the surface of the microarray (four-replicate blocks). The 167 immune and endocrine genes grouped into the following categories: cytokine genes, chemoattractants or chemokines and their respective receptor genes, immune regulatory genes, T-cell associated genes, pattern recognition or innate host defense genes, immunglobin (Ig) or Ig-related genes, complement genes, antigen processing or presenting genes, and genes encoding endocrine hormones or their receptors. As positive controls, the array includes 5 “housekeeping” genes (GAPDH, HPRT, PRL19, β-actin, β2-microglobulin), negative controls consisted of a Rhodococcus equi 17kD virulence protein gene, plasmid pACYC177 DNA, and a thaliana photosystem I chlorophyll a/b-binding protein gene, and the FcRgII gene intron. The printing controls included serially diluted bovine genomic DNA, and printing buffer only.
49 GPL4404 GUELPH Bovine 180 immune-endocrine microarray 180 University of Guelph 2006-10-09 Immunogenetics lab, Department of Pathobiology, Universitu of Guelph Arabidopsis thaliana,Bos taurus
Arabidopsis thaliana,Bos taurus		 RT-PCR spotted DNA/cDNA, GUELPH Bovine 180 immune-endocrine microarray, The in-house microarray consists of 167 RT-PCR derived DNA fragments representing 167 ORFs from bovine. The DNA fragments are printed 4 times on the surface of the microarray (four-replicate blocks). The 167 immune and endocrine genes grouped into the following categories: cytokine genes, chemoattractants or chemokines and their respective receptor genes, immune regulatory genes, T-cell associated genes, pattern recognition or innate host defense genes, immunglobin (Ig) or Ig-related genes, complement genes, antigen processing or presenting genes, and genes encoding endocrine hormones or their receptors. As positive controls, the array includes 5 “housekeeping” genes (GAPDH, HPRT, PRL19, β-actin, β2-microglobulin), negative controls consisted of a Rhodococcus equi 17kD virulence protein gene, plasmid pACYC177 DNA, and a thaliana photosystem I chlorophyll a/b-binding protein gene, and the FcRgII gene intron. The printing controls included serially diluted bovine genomic DNA, and printing buffer only.
50 GPL15796 PBMC gene expression RT-PCR assay 16 University of Eastern Finland 2012-07-11 http://www.appliedbiosystems.com/ Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, PBMC gene expression RT-PCR assay, RT-PCR (TaqMan® Gene Expression Assay)
51 GPL4198 Gene Express StaRT-PCR (GEX) Human MAQC 207 NCTR/FDA 2006-08-22 Gene Express Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Gene Express StaRT-PCR (GEX) Human MAQC,
52 GPL13138 Salivary_qPCR_Fluidigm 38 SRI International 2011-02-08 Fluidigm Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Salivary_qPCR_Fluidigm,
53 GPL15695 Exiqon microRNA Ready-to-Use PCR, Human panel I+II, V2.M 768 Cancer Hospital, Fudan University 2012-06-14 Exiqon Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Exiqon microRNA Ready-to-Use PCR, Human panel I+II, V2.M, miRCURY LNAâ„¢ Universal RT microRNA PCR, 4x Human panel I and 4x Human panel II in 384well PCR plates. One reaction each of 742 human microRNAs and 6 reference genes. For use with ABI 7900HT and other instruments.
54 GPL8952 miRNA profile from LPS-treated Akt1-/- macrophages 364 University of Crete 2009-07-30 Dana Farber Genomics Facility Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, miRNA profile from LPS-treated Akt1-/- macrophages,
55 GPL16850 Applied Biosystems TaqMan Array Human MicroRNA A+B Cards Set v3.0 768 The Chinese University of Hong Kong 2013-03-20 Applied Biosystems, Life Technologies Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biosystems TaqMan Array Human MicroRNA A+B Cards Set v3.0, PCR assay
56 GPL9731 Taqman Homo sapiens microRNA Low density arrays (TLDA) panel A 378 Hillman Cancer Center, University of Pittsburgh 2009-11-30 Applied Biosystems, Foster City, CA Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Taqman Homo sapiens microRNA Low density arrays (TLDA) panel A,
57 GPL9732 Taqman Homo sapiens microRNA Low density arrays (TLDA) panel B 288 Hillman Cancer Center, University of Pittsburgh 2009-11-30 Applied Biosystems, Foster City, CA Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Taqman Homo sapiens microRNA Low density arrays (TLDA) panel B,
58 GPL11316 Applied Biosystems Human Taqman MicroRNA Array v3.0 768 Johns Hopkins University School of Medicine 2010-12-14 Applied Biosystems by Life Technologies Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biosystems Human Taqman MicroRNA Array v3.0, qRT-PCR TaqMan Low-Density Array
59 GPL14842 Applied Biosystems Human Taqman MicroRNA Array v3.0 (256) 256 Johns Hopkins University School of Medicine 2011-11-04 Applied Biosystems by Life Technologies Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biosystems Human Taqman MicroRNA Array v3.0 (256), qRT-PCR TaqMan Low-Density Array
60 GPL2845 Applied Biosystems TaqMan Gene Expression Assays (human) 210,442 Life Technologies 2005-09-13 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biosystems TaqMan Gene Expression Assays (human), Pre-designed TaqMan probe and primer sets for quantitative gene expression studies of human genes.
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