Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(83)		   SAGE RsaI
(1)		   SAGE Sau3A
(5)		   MPSS
(17)		   GeneChip
(677)		   Tiling Array
(1,257)		   cDNA Array
(2,714)		   Oligo Array
(5,069)		   Bead Array
(183)		   Protein Array
(1)		   Antibody
(22)		   RT-PCR
(144)		   HT-Seq
(1,218)		   Other
(129)		   All
(11,528)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL13888 Weiss SABiosciences Custom RT-PCR profiler array CAPR 100083, 96, v1.0 96 Kansas State University 2011-07-12 SABiosciences - Qiagen Rattus norvegicus
Rattus norvegicus		 RT-PCR RT-PCR, Weiss SABiosciences Custom RT-PCR profiler array CAPR 100083, 96, v1.0, rat ESC RT-PCR custom array, see information on layout of array below, see PCR efficiency data provided by manufacturer, below. SABiosciences RT² Profiler panel of PCR assays.
2 GPL14773 WashingtonUniversity_Efimov_Human_Heart_96well_v1 96 Washington University in St. Louis 2011-10-23 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, WashingtonUniversity_Efimov_Human_Heart_96well_v1, PCR assay
3 GPL14610 Wafergen Biosystems SmartChip Human Oncology Panel v2 1,239 Cornell University 2011-09-22 Wafergen Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Wafergen Biosystems SmartChip Human Oncology Panel v2, SYBR Green qPCR assay
4 GPL11384 USZ/Human Toll-Like Receptor Signaling Pathway PCR Array PAHS-18A 84 University Hospital of Zurich 2011-01-05 SABiosciences Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, USZ/Human Toll-Like Receptor Signaling Pathway PCR Array PAHS-18A, see http://www.sabiosciences.com/rt_pcr_product/HTML/PAHS-018A.html
5 GPL10348 The Human Apoptosis RT² Profiler™ PCR Array (PAHS-012) 84 National Center for Toxicological Research 2010-04-21 SABiosciences Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, The Human Apoptosis RT² Profiler™ PCR Array (PAHS-012),
6 GPL11637 TaqMan® Rodent miRNA Card B v2.0 384 Stanford University School of Medicine 2011-01-20 Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, TaqMan® Rodent miRNA Card B v2.0, B Card Content: MicroRNAs less extensively studied (these tend to have less defined functions, be narrowly expressed, and/or be expressed at a low level).
7 GPL11636 TaqMan® Rodent miRNA card A v2.0 384 Stanford University School of Medicine 2011-01-20 Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, TaqMan® Rodent miRNA card A v2.0, A Card Content: MicroRNAs of demonstrated interest to the research community (these tend to be functionally defined, broadly expressed and/or highly expressed).
8 GPL10331 TaqMan® Rodent miRNA A+B Cards Set v2.0 471 health canada 2010-04-15 Applied Biosystem Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, TaqMan® Rodent miRNA A+B Cards Set v2.0, The TaqMan® Rodent MicroRNA Array Set v2.0 is a two card set containing a total of 364 TaqMan® MicroRNA Assays per card. The set enables accurate quantitation of 518 and 303 unique microRNAs for mouse and rat respectively in as little as 5 hours. Included on each array is three TaqMan® MicroRNA Assay endogenous controls for each species to aid in data normalization and one TaqMan® MicroRNA Assay not related to human as a negative control. Details on the included assays is available in the Target List file. Purchase of the Megaplex RT Primers, Rodent Pool Set is required to run this array set. An additional preamplification step is enabled by Megaplex PreAmp Primers, Rodent Pool Set for situations where sensitivity is of the utmost importance and/or sample is limiting.
9 GPL15466 TaqMan® Rodent MicroRNA Array v3.0 A/B 768 Renji Hospital, JiaoTong University School of Medicine 2012-04-19 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, TaqMan® Rodent MicroRNA Array v3.0 A/B, PCR assay
10 GPL15467 TaqMan® Human MicroRNA Array v3.0 A/B 768 Renji Hospital, JiaoTong University School of Medicine 2012-04-19 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan® Human MicroRNA Array v3.0 A/B, PCR assay
11 GPL15468 TaqMan® Human MicroRNA Array v2.0 A/B 671 Renji Hospital, JiaoTong University School of Medicine 2012-04-19 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan® Human MicroRNA Array v2.0 A/B, PCR assay
12 GPL13296 TaqMan® Array Human/Mouse MicroRNA Panel (custom early version) 150 Stanford University 2011-03-18 Applied Biosystems Homo sapiens,Mus musculus
Homo sapiens,Mus musculus		 RT-PCR RT-PCR, TaqMan® Array Human/Mouse MicroRNA Panel (custom early version),
13 GPL15919 TaqMan® Array Human MicroRNA Set Cards v2.0 125 H Lee Moffitt Cancer Center 2012-08-09 Applied Biosystem Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan® Array Human MicroRNA Set Cards v2.0, reverse transciped with Megaplex™ RT Primers, Human Pool Set v2.0
14 GPL10349 TaqMan® Array Human MicroRNA Panel v1.0 384 Erasmus University Medical Center 2010-04-21 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan® Array Human MicroRNA Panel v1.0,
15 GPL13329 TaqMan(r) Array Human MicroRNA B Cards v2.0 384 Fondazione Istituto FIRC di Oncologia Molecolare 2011-03-25 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan(r) Array Human MicroRNA B Cards v2.0,
16 GPL13328 TaqMan(r) Array Human MicroRNA A Cards v2.0 384 Fondazione Istituto FIRC di Oncologia Molecolare 2011-03-25 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan(r) Array Human MicroRNA A Cards v2.0,
17 GPL16178 TaqMan Rodent microRNA A Card v3.0 381 Kennedy Institute of Rheumatology 2012-10-15 Applied Biosystems Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, TaqMan Rodent microRNA A Card v3.0,
18 GPL14646 TaqMan Rodent MicroRNA A Array v2.0 384 Stanford University 2011-10-02 Applied Biosystems Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, TaqMan Rodent MicroRNA A Array v2.0, TaqMan array rodent microRNA A Card v2.0 Real-time PCR based microRNA microarrays
19 GPL14924 TaqMan qRT-PCR Homo sapiens Low-Density Array 380 v 2 358 University of Namur 2011-11-23 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan qRT-PCR Homo sapiens Low-Density Array 380 v 2, TaqMan-based qRT-PCR assay similar to GPL13728
20 GPL13728 TaqMan qRT-PCR Homo sapiens Low-Density Array 380 380 University of Namur 2011-06-15 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan qRT-PCR Homo sapiens Low-Density Array 380, TaqMan-based qRT-PCR assay.
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