Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(18)
  GeneChip
(809)
  Tiling Array
(1,310)
  cDNA Array
(2,770)
  Oligo Array
(5,679)
  Bead Array
(210)
  Protein Array
(1)
  Antibody
(28)
  RT-PCR
(209)
  HT-Seq
(1,710)
  Other
(187)
  All
(13,032)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL13888 Weiss SABiosciences Custom RT-PCR profiler array CAPR 100083, 96, v1.0 96 Kansas State University 2011-07-12 SABiosciences - Qiagen Rattus norvegicus
Rattus norvegicus
RT-PCR RT-PCR, Weiss SABiosciences Custom RT-PCR profiler array CAPR 100083, 96, v1.0, rat ESC RT-PCR custom array, see information on layout of array below, see PCR efficiency data provided by manufacturer, below. SABiosciences RT² Profiler panel of PCR assays.
2 GPL14773 WashingtonUniversity_Efimov_Human_Heart_96well_v1 96 Washington University in St. Louis 2011-10-23 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, WashingtonUniversity_Efimov_Human_Heart_96well_v1, PCR assay
3 GPL14610 Wafergen Biosystems SmartChip Human Oncology Panel v2 1,239 Cornell University 2011-09-22 Wafergen Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, Wafergen Biosystems SmartChip Human Oncology Panel v2, SYBR Green qPCR assay
4 GPL11384 USZ/Human Toll-Like Receptor Signaling Pathway PCR Array PAHS-18A 84 University Hospital of Zurich 2011-01-05 SABiosciences Homo sapiens
Homo sapiens
RT-PCR RT-PCR, USZ/Human Toll-Like Receptor Signaling Pathway PCR Array PAHS-18A, see http://www.sabiosciences.com/rt_pcr_product/HTML/PAHS-018A.html
5 GPL18239 UIC-Hu-SBP-AG v1.0 137 University of Illinois at Chicago 2014-01-31 Qiagen Homo sapiens
Homo sapiens
RT-PCR RT-PCR, UIC-Hu-SBP-AG v1.0,
6 GPL16952 Transcription factor qRT-PCR 1,880 MPIMP 2013-04-02 primers for qRT-PCR were obtained from Eurofins MWG Operon Arabidopsis thaliana
Arabidopsis thaliana
RT-PCR RT-PCR, Transcription factor qRT-PCR, real-time PCR assay using SYBR Green chemistry
7 GPL10923 Tongji University School of Medicine TaqMan MicroRNA Array v2.0 B 294 Key Laboratory of Arrhythmias, Ministry of Education, China (Tongji University School of Medicine) 2010-09-15 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, Tongji University School of Medicine TaqMan MicroRNA Array v2.0 B,
8 GPL10922 Tongji University School of Medicine TaqMan MicroRNA Array v2.0 A 381 Key Laboratory of Arrhythmias, Ministry of Education, China (Tongji University School of Medicine) 2010-09-15 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, Tongji University School of Medicine TaqMan MicroRNA Array v2.0 A,
9 GPL10348 The Human Apoptosis RT² Profiler™ PCR Array (PAHS-012) 84 National Center for Toxicological Research 2010-04-21 SABiosciences Homo sapiens
Homo sapiens
RT-PCR RT-PCR, The Human Apoptosis RT² Profiler™ PCR Array (PAHS-012),
10 GPL11637 TaqMan® Rodent miRNA Card B v2.0 384 Stanford University School of Medicine 2011-01-20 Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus
RT-PCR RT-PCR, TaqMan® Rodent miRNA Card B v2.0, B Card Content: MicroRNAs less extensively studied (these tend to have less defined functions, be narrowly expressed, and/or be expressed at a low level).
11 GPL11636 TaqMan® Rodent miRNA card A v2.0 384 Stanford University School of Medicine 2011-01-20 Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus
RT-PCR RT-PCR, TaqMan® Rodent miRNA card A v2.0, A Card Content: MicroRNAs of demonstrated interest to the research community (these tend to be functionally defined, broadly expressed and/or highly expressed).
12 GPL10331 TaqMan® Rodent miRNA A+B Cards Set v2.0 471 health canada 2010-04-15 Applied Biosystem Mus musculus,Rattus norvegicus
Mus musculus,Rattus norvegicus
RT-PCR RT-PCR, TaqMan® Rodent miRNA A+B Cards Set v2.0, The TaqMan® Rodent MicroRNA Array Set v2.0 is a two card set containing a total of 364 TaqMan® MicroRNA Assays per card. The set enables accurate quantitation of 518 and 303 unique microRNAs for mouse and rat respectively in as little as 5 hours. Included on each array is three TaqMan® MicroRNA Assay endogenous controls for each species to aid in data normalization and one TaqMan® MicroRNA Assay not related to human as a negative control. Details on the included assays is available in the Target List file. Purchase of the Megaplex RT Primers, Rodent Pool Set is required to run this array set. An additional preamplification step is enabled by Megaplex PreAmp Primers, Rodent Pool Set for situations where sensitivity is of the utmost importance and/or sample is limiting.
13 GPL15466 TaqMan® Rodent MicroRNA Array v3.0 A/B 768 Renji Hospital, JiaoTong University School of Medicine 2012-04-19 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, TaqMan® Rodent MicroRNA Array v3.0 A/B, PCR assay
14 GPL17608 TaqMan® OpenArray® Human MicroRNA Panel, QuantStudio™ 12K Flex 755 University of Michigan 2013-08-21 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, TaqMan® OpenArray® Human MicroRNA Panel, QuantStudio™ 12K Flex, PCR assay Each TaqMan® OpenArray® Human MicroRNA Panel, QuantStudio™ 12K Flex contains 754 well-characterized human miRNA sequences from the Sanger miRBase v14. All 754 assays have been functionally validated with miRNA artificial templates.
15 GPL17485 TaqMan® OpenArray® Human MicroRNA Panel (miRBase v14) 758 Washington University in St.Louis 2013-07-23 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, TaqMan® OpenArray® Human MicroRNA Panel (miRBase v14),
16 GPL15467 TaqMan® Human MicroRNA Array v3.0 A/B 768 Renji Hospital, JiaoTong University School of Medicine 2012-04-19 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, TaqMan® Human MicroRNA Array v3.0 A/B, PCR assay
17 GPL15468 TaqMan® Human MicroRNA Array v2.0 A/B 671 Renji Hospital, JiaoTong University School of Medicine 2012-04-19 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, TaqMan® Human MicroRNA Array v2.0 A/B, PCR assay
18 GPL18252 TaqMan® Array Mouse Immune Panel 96 University of Manchester 2014-02-05 Applied Biosystems Mus musculus
Mus musculus
RT-PCR RT-PCR, TaqMan® Array Mouse Immune Panel, 383-well TaqMan Low Density Array (TLDA)
19 GPL13296 TaqMan® Array Human/Mouse MicroRNA Panel (custom early version) 150 Stanford University 2011-03-18 Applied Biosystems Homo sapiens,Mus musculus
Homo sapiens,Mus musculus
RT-PCR RT-PCR, TaqMan® Array Human/Mouse MicroRNA Panel (custom early version),
20 GPL15919 TaqMan® Array Human MicroRNA Set Cards v2.0 125 H Lee Moffitt Cancer Center 2012-08-09 Applied Biosystem Homo sapiens
Homo sapiens
RT-PCR RT-PCR, TaqMan® Array Human MicroRNA Set Cards v2.0, reverse transciped with Megaplex™ RT Primers, Human Pool Set v2.0
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