Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(83)		   SAGE RsaI
(1)		   SAGE Sau3A
(5)		   MPSS
(17)		   GeneChip
(677)		   Tiling Array
(1,257)		   cDNA Array
(2,714)		   Oligo Array
(5,069)		   Bead Array
(183)		   Protein Array
(1)		   Antibody
(22)		   RT-PCR
(144)		   HT-Seq
(1,218)		   Other
(129)		   All
(11,528)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
81 GPL16377 Mouse Cytokine/Chemokine Array - I Wang Lab 96 Duke University 2012-12-12 Self-designed by Dr. Xiao-fan Wang Lab at Department of Pharmacology and Cancer Biology at Duke University Medical Center. Mus musculus
Mus musculus		 RT-PCR RT-PCR, Mouse Cytokine/Chemokine Array - I Wang Lab, PCR assay containig 95 cytokine/chemokine genes and their receptors.
82 GPL8952 miRNA profile from LPS-treated Akt1-/- macrophages 364 University of Crete 2009-07-30 Dana Farber Genomics Facility Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 RT-PCR RT-PCR, miRNA profile from LPS-treated Akt1-/- macrophages,
83 GPL6803 Low Density Microvascular Differentiation Array (LD-MDA) version 2.0 96 ETH Zurich 2008-04-30 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Low Density Microvascular Differentiation Array (LD-MDA) version 2.0, Microfluidic 384-well TaqManâ„¢ real time RT-PCR platform
84 GPL6802 Low Density Microvascular Differentiation Array (LD-MDA) version 1.0 192 ETH Zurich 2008-04-30 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Low Density Microvascular Differentiation Array (LD-MDA) version 1.0, Microfluidic 384-well TaqManâ„¢ real time RT-PCR platform
85 GPL15844 Lonza StellARay mouse cell cycle qPCR array 25 University of Michigan 2012-07-24 Lonza Mus musculus
Mus musculus		 RT-PCR RT-PCR, Lonza StellARay mouse cell cycle qPCR array, PCR assay for cell cycle-related genes.
86 GPL15766 Life Technologies murine miRNA expression assays Murine Megaplex pools A and B 522 Center for Medical Genetics 2012-07-04 Life Technologies Mus musculus
Mus musculus		 RT-PCR RT-PCR, Life Technologies murine miRNA expression assays Murine Megaplex pools A and B, PCR assay
87 GPL15765 Life Technologies Human miRNA expression assays 450-plex 448 Center for Medical Genetics 2012-07-04 Life Technologies Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Life Technologies Human miRNA expression assays 450-plex, PCR assay
88 GPL9804 JCOLL Zebrafish 189 qRT-PCR v1.0 189 INIA 2009-12-15 Applied Biosystems Danio rerio
Danio rerio		 RT-PCR RT-PCR, JCOLL Zebrafish 189 qRT-PCR v1.0,
89 GPL8930 Human Tumor Necrosis Factor (TNF) Ligand and Receptor PCR Array cat. #PAHS-063 89 National Cheng Kung University 2009-07-27 SuperArray Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Human Tumor Necrosis Factor (TNF) Ligand and Receptor PCR Array cat. #PAHS-063, The Human Tumor Necrosis Factor (TNF) Ligand and Receptor Signaling Pathways RT² Profiler™ PCR Array profiles the expression of 84 genes whose expression is controlled by or involved in the TNF ligand and TNF receptor signaling pathways. Members of the TNF Superfamily and TNF Receptor Superfamily are represented on this array. Genes involved in the TNFR1 and TNFR2 Signaling Pathways are also included. Using real-time PCR, you can easily and reliably analyze expression of a focused panel of genes related to the TNF signaling with this array.
90 GPL8370 Human Stress & Toxicity PathwayFinder PCR Array PAHS-003A 96 University of Illinois at Urbana-Champaign 2009-03-31 Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Human Stress & Toxicity PathwayFinder PCR Array PAHS-003A, From manufacturer SA biosciences (former superarray) website: The Human Stress and Toxicity PathwayFinder™ RT²Profiler™ PCR Array profiles the expression of 84 genes whose expression level is indicative of stress and toxicity. The array includes genes that are directly up-regulated by oxidative or metabolic stress and by heat shock. The array also includes genes representative of pathways activated by prolonged stress, which range from cell death by apoptosis or necrosis to growth arrest and senescence to proliferation and carcinogenesis. This kit is also designed to include only those genes that have been reported in the literature to respond to a toxic compound at the transcriptional level. Using real-time PCR, you can easily and reliably analyze expression of a focused panel of genes related to Stress & Toxicity Pathway with this array.
91 GPL16376 Human miRNA Array - I Li Lab 247 Duke University 2012-12-12 Self-designed by Dr. Qi-jing Li Lab at Department of Immunology at Duke University Medical Center. Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Human miRNA Array - I Li Lab, PCR assay containig 245 specific miRNA forward primer
92 GPL16778 Human MDR resistance in cancer qRT-PCR array 384 NCI 2013-03-11 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Human MDR resistance in cancer qRT-PCR array, TaqMan-based qRT-PCR assay
93 GPL11225 Human JAK / STAT Signaling Pathway PCR Array 84 NIAID, NIH 2010-11-17 SABiosciences/QIAGene Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Human JAK / STAT Signaling Pathway PCR Array, The Human JAK / STAT Signaling Pathway RT² Profiler™ PCR Array profiles the expression of 84 genes related to Jak- and Stat-mediated signaling. The array represents all known Jak and Stat family members, the receptors that activate them, nuclear co-factors and co-activators associated with the Stat proteins, Stat-inducible genes, and negative regulators of the pathway. Using real-time PCR, you can easily and reliably analyze expression of a focused panel of genes related to the Jak / Stat Signaling Pathway with this array.
94 GPL11231 Human Inflammatory Response and Autoimmunity PCR Array 96 Rosalind Franklin University of Medicine and Science 2010-11-18 SuperArray Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Human Inflammatory Response and Autoimmunity PCR Array,
95 GPL4473 GUELPH Bovine immune-endocrine microarray 720 University of Guelph 2006-10-22 Immunogenetics lab, Department of Pathobiology, Universitu of Guelph Bos taurus
Bos taurus		 RT-PCR spotted DNA/cDNA, GUELPH Bovine immune-endocrine microarray, The in-house microarray consists of 167 RT-PCR derived DNA fragments representing 167 ORFs from bovine. The DNA fragments are printed 4 times on the surface of the microarray (four-replicate blocks). The 167 immune and endocrine genes grouped into the following categories: cytokine genes, chemoattractants or chemokines and their respective receptor genes, immune regulatory genes, T-cell associated genes, pattern recognition or innate host defense genes, immunglobin (Ig) or Ig-related genes, complement genes, antigen processing or presenting genes, and genes encoding endocrine hormones or their receptors. As positive controls, the array includes 5 “housekeeping” genes (GAPDH, HPRT, PRL19, β-actin, β2-microglobulin), negative controls consisted of a Rhodococcus equi 17kD virulence protein gene, plasmid pACYC177 DNA, and a thaliana photosystem I chlorophyll a/b-binding protein gene, and the FcRgII gene intron. The printing controls included serially diluted bovine genomic DNA, and printing buffer only.
96 GPL4404 GUELPH Bovine 180 immune-endocrine microarray 180 University of Guelph 2006-10-09 Immunogenetics lab, Department of Pathobiology, Universitu of Guelph Arabidopsis thaliana,Bos taurus
Arabidopsis thaliana,Bos taurus		 RT-PCR spotted DNA/cDNA, GUELPH Bovine 180 immune-endocrine microarray, The in-house microarray consists of 167 RT-PCR derived DNA fragments representing 167 ORFs from bovine. The DNA fragments are printed 4 times on the surface of the microarray (four-replicate blocks). The 167 immune and endocrine genes grouped into the following categories: cytokine genes, chemoattractants or chemokines and their respective receptor genes, immune regulatory genes, T-cell associated genes, pattern recognition or innate host defense genes, immunglobin (Ig) or Ig-related genes, complement genes, antigen processing or presenting genes, and genes encoding endocrine hormones or their receptors. As positive controls, the array includes 5 “housekeeping” genes (GAPDH, HPRT, PRL19, β-actin, β2-microglobulin), negative controls consisted of a Rhodococcus equi 17kD virulence protein gene, plasmid pACYC177 DNA, and a thaliana photosystem I chlorophyll a/b-binding protein gene, and the FcRgII gene intron. The printing controls included serially diluted bovine genomic DNA, and printing buffer only.
97 GPL4198 Gene Express StaRT-PCR (GEX) Human MAQC 207 NCTR/FDA 2006-08-22 Gene Express Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Gene Express StaRT-PCR (GEX) Human MAQC,
98 GPL10974 Francisella tularensis full genome qRT-PCR 1,068 J Craig Venter Institute 2010-09-24 Francisella tularensis
Francisella tularensis		 RT-PCR RT-PCR, Francisella tularensis full genome qRT-PCR, Francisella tularensis full genome qRT-PCR
99 GPL15695 Exiqon microRNA Ready-to-Use PCR, Human panel I+II, V2.M 768 Cancer Hospital, Fudan University 2012-06-14 Exiqon Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Exiqon microRNA Ready-to-Use PCR, Human panel I+II, V2.M, miRCURY LNAâ„¢ Universal RT microRNA PCR, 4x Human panel I and 4x Human panel II in 384well PCR plates. One reaction each of 742 human microRNAs and 6 reference genes. For use with ABI 7900HT and other instruments.
100 GPL10709 Erasmus MC-Sophia Children's Hospital Custom TaqMan array 32 Erasmus MC-Sophia Children's Hospital 2010-07-20 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Erasmus MC-Sophia Children's Hospital Custom TaqMan array,
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