Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(348)
  blood
(229)
  connective
(120)
  reproductive
(104)
  muscular
(67)
  digestive
(75)
  liver
(29)
  lung
(108)
  urinary
(0)
  endo/exo-crine
(210)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(1)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(95)
  unclassified
(108)
  all
(1,697)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1681 GSM753 SAGE_SciencePark_MCF7_estradiol_3h 17,821 M.D. Anderson Cancer Center 2001-11-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
breast Breast Carcinoma - Pleaural effusion
1682 GSM752 SAGE_SciencePark_MCF7_estradiol_10h 17,213 M.D. Anderson Cancer Center 2001-11-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
breast Breast Carcinoma - Pleaural effusion
1683 GSM750 SAGE_SciencePark_MCF7_Control_0h 15,965 M.D. Anderson Cancer Center 2001-11-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
breast Breast Carcinoma - Pleaural effusion
1684 GSM725 SAGE_MDA453 9,246 M.D. Anderson Cancer Center 2001-11-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
breast Cell line MDA-MB-453: Human breast carcinoma, malignant effusion. Estrogen receptor negative. From a 48 yo female on radiation and chemotherapy. Sex: Female Organ: Breast Cell_type: Malignant effusion Cell_line: MDA-MB-453 Library treatment: non-normalized Tissue description: Cell line MDA-MB-453 of human breast carcinoma, malignant effusion, estrogen receptor negative, from patient treated with radiation and chemotherapy. Tissue supplier: C. Marcelo Aldaz Sample type: Cell line Producer: Aldaz Laboratory Clones generated to date: 0 Sequences generated to date: 543 This library represents a Cancer Genome Anatomy Project library, which was either produced through CGAP funding, or donated to CGAP. The Cancer Genome Anatomy Project (CGAP: http://cgap.nci.nih.gov) is an interdisciplinary program established and administered by the National Cancer Institute (NCI: http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell. Keywords = mammary gland Keywords = adenocarcinoma Keywords = SAGE Keywords = cell line Keywords = CGAP Keywords = non-normalized Keywords = SAGE library method Keywords = cell line
1685 GSM748 SAGE_SKBR3 3,968 M.D. Anderson Cancer Center 2001-11-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
breast ATCC cell line SK-BR-3. Human breast adenocarcinoma, malignant pleural effusion, estrogen receptor negative. 43 yo female treated with radiation, steroids, cytoxan, 5-fluorouracil. Sex: Female Organ: Breast Cell_type: Epithelium Cell_line: SK-BR-3 Library treatment: non-normalized Tissue description: ATCC cell line SK-BR-3. Human breast adenocarcinoma from a malignant pleural effusion. Estrogen receptor negative. Patient treated with ratiation, steroids cytoxan and 5-fluorouracil. Tissue supplier: C. Marcelo Aldaz Sample type: Cell line Producer: Aldaz Laboratory Clones generated to date: 0 Sequences generated to date: 122 This library represents a Cancer Genome Anatomy Project library, which was either produced through CGAP funding, or donated to CGAP. The Cancer Genome Anatomy Project (CGAP: http://cgap.nci.nih.gov) is an interdisciplinary program established and administered by the National Cancer Institute (NCI: http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell. Keywords = mammary gland Keywords = adenocarcinoma Keywords = SAGE Keywords = cell line Keywords = CGAP Keywords = non-normalized Keywords = SAGE library method Keywords = cell line
1686 GSM751 SAGE_SciencePark_MCF7_control_3h 3,260 M.D. Anderson Cancer Center 2001-11-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
breast Breast Carcinoma - Pleaural effusion
1687 GSM718 SAGE_HMEC-B41 955 M.D. Anderson Cancer Center 2001-11-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
breast Cell culture HMEC-B41 of normal human mammary epithelial cells derived from normal mammoplasty specimen from 51 yo female Sex: Female Organ: Breast Cell_type: Epithelium Cell_line: HMEC-B41 Library treatment: non-normalized Tissue description: cell culture HMEC-B41 of normal human mammary epithelial cells derived from normal mammoplasty specimen Tissue supplier: C. Marcelo Aldaz Sample type: Cell line Producer: Aldaz Laboratory Clones generated to date: 0 Sequences generated to date: 144 This library represents a Cancer Genome Anatomy Project library, which was either produced through CGAP funding, or donated to CGAP. The Cancer Genome Anatomy Project (CGAP: http://cgap.nci.nih.gov) is an interdisciplinary program established and administered by the National Cancer Institute (NCI: http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell. Keywords = mammary gland Keywords = epithelium Keywords = normal Keywords = SAGE Keywords = cell line Keywords = CGAP Keywords = non-normalized Keywords = SAGE library method Keywords = cell line
1688 GSM581 Rat_extraocular muscle 17,602 Case Western Reserve University 2001-11-12 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus
muscle Adult rat extraocular muscle
1689 GSM580 R1 Embryonic Stem Cells 44,570 National Institute on Aging, NIH 2001-10-25 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
embryo R1 ES cells, undifferentiated
1690 GSM571 HRPE1_SAGE 38,358 Massachusetts Eye and Ear 2001-09-19 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
retina human retinal pigment epithelium (RPE)
1691 GSM573 HPR2_SAGE 34,066 Massachusetts Eye and Ear 2001-09-19 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
retina human peripheral retina
1692 GSM574 HMAC2_SAGE 33,522 Massachusetts Eye and Ear 2001-09-19 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
retina Human central retina (macula)
1693 GSM572 HPR1_SAGE 22,812 Massachusetts Eye and Ear 2001-09-19 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
retina human peripheral retina
1694 GSM55 mouse_forelimb 23,140 National Human Genome Research Institute 2001-06-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
bone E11.5 intact developing B6C3H forelimb buds
1695 GSM56 mouse_hindlimb 22,329 National Human Genome Research Institute 2001-06-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
bone E11.5 intact developing B6C3H hindlimbs
1696 GSM2 HCMV-infected foreskin fibroblasts 5,626 Institute of Medical Microbiology, University of Bern 2000-09-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
skin mRNA of HCMV-infected human foreskin fibroblasts
1697 GSM1 Foreskin Fibroblasts 5,494 Institute of Medical Microbiology, University of Bern 2000-09-28 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
skin mRNA of untreated foreskin fibroblasts
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