Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(224)		   SAGE RsaI
(1)		   SAGE Sau3A
(16)		   MPSS
(56)		   GeneChip
(16,580)		   Tiling Array
(3,529)		   cDNA Array
(5,792)		   Oligo Array
(11,628)		   Bead Array
(2,848)		   Protein Array
(1)		   Antibody
(37)		   RT-PCR
(223)		   HT-Seq
(4,411)		   Other
(158)		   All
(45,516)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
2981 Suppression of the chromatin remodeling protein CHD3 and platinum resistance in ovarian cancer (GSE33011) [Tiling Array] CSHL-Human-MOMA2 368K CpG tiling array (GPL14747) Cold Spring Harbor Laboratory 2011-10-17 Homo sapiens
Homo sapiens		 29,412,560
(367,657 x 80) 		80 by_platform
by_series
2982 Genome-wide analysis of PHABULOSA targets in Arabidopsis root meristem (GSE33015) [Tiling Array] Arabidopsis Tiling 1.0R [TAIR7-based custom CDF, ORF version] (GPL9139) Boyce Thompson Institute 2011-10-17 Arabidopsis thaliana
Arabidopsis thaliana		 207,690
(29,670 x 7) 		7 by_platform
by_series
2983 GLD-1 mRNA regulation (GSE33084) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2011-10-19 Caenorhabditis elegans
Caenorhabditis elegans		 37
(0 x 37) 		37 by_platform
by_series
2984 Polysome profiling of wild-type and gld-1 mutant animals (GSE33083) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2011-10-19 Caenorhabditis elegans
Caenorhabditis elegans		 16
(0 x 16) 		16 by_platform
by_series
2985 mRNA expression analysis in wild-type, gld-1 and cgh-1 mutant animals (GSE33082) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2011-10-19 Caenorhabditis elegans
Caenorhabditis elegans		 9
(0 x 9) 		9 by_platform
by_series
2986 Identification of GLD-1 target mRNAs (GSE33081) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2011-10-19 Caenorhabditis elegans
Caenorhabditis elegans		 6
(0 x 6) 		6 by_platform
by_series
2987 Hydroxymethyl DNA-IP of genomic DNA for many different normal human tissues (GSE33219) [Tiling Array] Human DNA Methylation 4x72K ENCODE HG17 Targeted Tiling Array (GPL14788) Univeristy of Edinburgh 2011-10-25 Homo sapiens
Homo sapiens		 1,001,924
(71,566 x 14) 		2 5 2 2 3 by_platform
by_series
2988 Developmental features of DNA methylation during activation of the embryonic zebrafish genome (GSE33236) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-10-26 Danio rerio
Danio rerio		 26,018,700
(2,168,225 x 12) 		2 10 by_platform
by_series
2989 Genome-Wide binding sites of two MADS-domain transcription factors SOC1 and SVP in Arabidopsis during the floral transition (GSE33297) [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) National University of Singapore 2011-10-27 Arabidopsis thaliana
Arabidopsis thaliana		 12
(0 x 12) 		12 by_platform
by_series
2990 RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation (GSE33404) [Tiling Array] pombe 4X44K_v3 (GPL6503) NCI 2011-11-02 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 214,840
(42,968 x 5) 		5 by_platform
by_series
2991 Epigenetic profiling of histone H3K4me1, H3K4me3, H3K27me3, H3ac, H4ac, CBP and P300 using ChIP-chip (GSE33517) [Tiling Array] NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 537603] (GPL14850) University of Michigan 2011-11-07 Mus musculus
Mus musculus		 3,530,145
(706,029 x 5) 		1 4 by_platform
by_series
2992 Identification and characterization of Hoxa9 binding sites in hematopoietic cells (GSE33518) [Tiling Array] NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 537603] (GPL14850) University of Michigan 2011-11-07 Mus musculus
Mus musculus		 3,530,145
(706,029 x 5) 		1 4 by_platform
by_series
2993 Epigenetic profiling of histone H3K4me1, H3K4me3, H3K27me3, H3ac, H4ac, CBP and P300 using ChIP-chip (GSE33517) [Tiling Array] NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 10451] (GPL14849) University of Michigan 2011-11-07 Mus musculus
Mus musculus		 2,300,220
(383,370 x 6) 		6 by_platform
by_series
2994 Identification and characterization of Hoxa9 binding sites in hematopoietic cells (GSE33518) [Tiling Array] NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 10451] (GPL14849) University of Michigan 2011-11-07 Mus musculus
Mus musculus		 2,300,220
(383,370 x 6) 		6 by_platform
by_series
2995 Expression profiles of embryo-defective Arabidopsis thaliana mutants increased size exclusion limit1 (ise1) and ise2 (GSE33558) [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) UC Berkeley 2011-11-08 Arabidopsis thaliana
Arabidopsis thaliana		 12
(0 x 12) 		12 by_platform
by_series
2996 dNTP pools determine fork progression and origin usage under replication stress (GSE33686) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) Institute of Human Genetics - CNRS 2011-11-14 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 13
(0 x 13) 		13 by_platform
by_series
2997 Transcriptome analysis of hpl-2(tm1489) vs wild-type worms at mixed embryonic and third larval stages (GSE33700) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) University of Bern 2011-11-15 Caenorhabditis elegans
Caenorhabditis elegans		 12
(0 x 12) 		6 6 by_platform
by_series
2998 SRE1 Regulates Iron-Dependent Gene Expression in the Fungal Pathogen Histoplasma capsulatum (GSE33792) [Tiling Array] UCSF/Sil lab-Histoplasma capsulatum-G217Borfs2 (GPL14901) University of California 2011-11-17 Ajellomyces capsulatus
Ajellomyces capsulatus		 299,520
(14,976 x 20) 		20 by_platform
by_series
2999 Genome-wide transcriptional responses to benzo[a]pyrene and clofibrate in the tunicate Oikopleura dioica (GSE33818) [Tiling Array] SARS_Oikopleura_WG_til (GPL14906) Sars International Centre for Marine Molecular Biology 2011-11-18 Oikopleura dioica
Oikopleura dioica		 133,480
(16,685 x 8) 		8 by_platform
by_series
3000 Early Leaf Development: A not so gradual process (GSE33936) [Tiling Array] Affymetrix AGRONOMICS Tiling Array [CDF: agronomics1_TAIR9_gene] (GPL14926) VIB-PSB 2011-11-23 Arabidopsis thaliana
Arabidopsis thaliana		 907,110
(30,237 x 30) 		30 by_platform
by_series
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