Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(224)		   SAGE RsaI
(1)		   SAGE Sau3A
(16)		   MPSS
(56)		   GeneChip
(16,580)		   Tiling Array
(3,529)		   cDNA Array
(5,792)		   Oligo Array
(11,628)		   Bead Array
(2,848)		   Protein Array
(1)		   Antibody
(37)		   RT-PCR
(223)		   HT-Seq
(4,411)		   Other
(158)		   All
(45,516)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
2981 DamID for Swi6, Rdp1 and Dcr1 in Schizosaccharomyces pombe (GSE24360) [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) Friedrich Miescher Institute for Biomedical Research 2010-09-24 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 29
(0 x 29) 		29 by_platform
by_series
2982 RNA expression for dcr1D, rdp1D, ago1D and swi6D (GSE36113) [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) Friedrich Miescher Institute for Biomedical Research 2012-02-27 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 18
(0 x 18) 		18 by_platform
by_series
2983 DamID for Cid14 in wild-type and swi6∆ (GSE36956) [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) Friedrich Miescher Institute for Biomedical Research 2012-03-30 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 4
(0 x 4) 		4 by_platform
by_series
2984 GLD-1 mRNA regulation (GSE33084) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2011-10-19 Caenorhabditis elegans
Caenorhabditis elegans		 37
(0 x 37) 		37 by_platform
by_series
2985 Polysome profiling of wild-type and gld-1 mutant animals (GSE33083) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2011-10-19 Caenorhabditis elegans
Caenorhabditis elegans		 16
(0 x 16) 		16 by_platform
by_series
2986 mRNA expression analysis in wild-type, gld-1 and cgh-1 mutant animals (GSE33082) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2011-10-19 Caenorhabditis elegans
Caenorhabditis elegans		 9
(0 x 9) 		9 by_platform
by_series
2987 Identification of GLD-1 target mRNAs (GSE33081) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2011-10-19 Caenorhabditis elegans
Caenorhabditis elegans		 6
(0 x 6) 		6 by_platform
by_series
2988 mRNA expression analysis in mock and cgh-1(RNAi) animals (GSE36713) [Tiling Array] [Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array (GPL5634) Friedrich Miescher Institute 2012-03-22 Caenorhabditis elegans
Caenorhabditis elegans		 6
(0 x 6) 		6 by_platform
by_series
2989 Genome-wide profiling of salt fractions maps physical properties of chromatin (GSE13217) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) Fred Hutchinson Cancer Research Center 2008-10-15 Drosophila melanogaster
Drosophila melanogaster		 97,981,012
(2,130,022 x 46) 		46 by_platform
by_series
2990 A native chromatin purification system for epigenomic profiling in C. elegans (GSE18898) [Tiling Array] NimbleGen C_elegans_WS170_Tiling_Iso_HX1 tiling design (GPL7098) Fred Hutchinson Cancer Research Center 2009-11-04 Caenorhabditis elegans
Caenorhabditis elegans		 38,579,526
(2,143,307 x 18) 		3 15 by_platform
by_series
2991 Tissue-specific nuclei purification from animal models for genome-wide expression and chromatin profiling. (GSE31602) [Tiling Array] NimbleGen C_elegans_WS170_Tiling_Iso_HX1 tiling design (GPL7098) Fred Hutchinson Cancer Research Center 2011-08-23 Caenorhabditis elegans
Caenorhabditis elegans		 30,006,298
(2,143,307 x 14) 		6 8 by_platform
by_series
2992 CATCH-IT method for measuring nucleosome turnover (GSE19788) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) Fred Hutchinson Cancer Research Center 2010-01-07 Drosophila melanogaster
Drosophila melanogaster		 25,560,264
(2,130,022 x 12) 		12 by_platform
by_series
2993 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis (GSE19884) [Tiling Array] NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design (GPL9833) Fred Hutchinson Cancer Research Center 2010-01-13 Mus musculus
Mus musculus		 23,512,544
(2,137,504 x 11) 		11 by_platform
by_series
2994 Isw2 and Ume6 ChIP-chip in transcription factor deletion (Δume6, Δnrg1, Δcin5, and Δsok2) and DNA-looping deficient (sua7-1) cells (GSE39542) [Tiling Array] NimbleGen Saccharomyces cerevisiae 730K 090319_Scer_KH_CGH (GPL15833) Fred Hutchinson Cancer Research Center 2012-07-20 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 16,168,540
(702,980 x 23) 		23 by_platform
by_series
2995 DamID-based chromatin profiling of UpSET in Kc cells and chromatic accesibility evaluation in UpSET knock down Kc cells (GSE34718) [Tiling Array] NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725] (GPL15057) Fred Hutchinson Cancer Research Center 2011-12-24 Drosophila melanogaster
Drosophila melanogaster		 10,789,340
(2,157,868 x 5) 		5 by_platform
by_series
2996 UpSET Recruits HDAC Complexes and Restricts Chromatin Accessibility and Acetylation at Promoter Regions (GSE34720) [Tiling Array] NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725] (GPL15057) Fred Hutchinson Cancer Research Center 2011-12-24 Drosophila melanogaster
Drosophila melanogaster		 10,789,340
(2,157,868 x 5) 		5 by_platform
by_series
2997 Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks (GSE12212) [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) Fred Hutchinson Cancer Research Center 2008-07-23 Arabidopsis thaliana
Arabidopsis thaliana		 8,211,315
(391,015 x 21) 		4 17 by_platform
by_series
2998 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis (GSE19884) [Tiling Array] NimbleGen Mus musculus 2M 090316_MM9_Promoter_MeDIP_HX1 tiling design (GPL9832) Fred Hutchinson Cancer Research Center 2010-01-13 Mus musculus
Mus musculus		 6,159,966
(2,053,322 x 3) 		3 by_platform
by_series
2999 Baculovirus-encoded protein expression for epigenomic profiling in Drosophila cells (GSE21416) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) Fred Hutchinson Cancer Research Center 2010-04-20 Drosophila melanogaster
Drosophila melanogaster		 4,260,044
(2,130,022 x 2) 		2 by_platform
by_series
3000 Differential Expression in UpSET mutant ovaries (GSE34719) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) Fred Hutchinson Cancer Research Center 2011-12-24 Drosophila melanogaster
Drosophila melanogaster		 4,260,044
(2,130,022 x 2) 		2 by_platform
by_series
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