Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(228)
  SAGE RsaI
(1)
  SAGE Sau3A
(16)
  MPSS
(67)
  GeneChip
(19,582)
  Tiling Array
(4,015)
  cDNA Array
(5,993)
  Oligo Array
(14,254)
  Bead Array
(4,043)
  Protein Array
(1)
  Antibody
(43)
  RT-PCR
(338)
  HT-Seq
(7,682)
  Other
(247)
  All
(56,529)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
81 Cancer Genome Anatomy Project (CGAP) SAGE Libraries (GSE14) [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) National Cancer Institute 2001-11-29 Mus musculus
Mus musculus
221,068,960
(789,532 x 280)
86 30 13 18 12 12 4 7 9 33 41 15 by_platform
by_series
82 Genome-wide characterization of allelic chromatin in human fibroblast and lymphoblastoid cell lines by high-density allele-specific analyses (GSE51272) [Bead Array] Illumina HumanOmni2.5-Quad BeadChip (GPL13314) McGill University 2013-09-30 Homo sapiens
Homo sapiens
220,500,000
(2,450,000 x 90)
90 by_platform
by_series
83 Diverse somatic mutation patterns and pathway alterations in human cancers (GSE23768) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) Genentech, Inc. 2010-08-24 Homo sapiens
Homo sapiens
219,119,715
(1,432,155 x 153)
26 43 84 by_platform
by_series
84 Exon array profiling detects EML4-ALK fusion in breast, colorectal and non-small cell lung cancers. (GSE16534) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) Genentech, Inc 2009-06-10 Homo sapiens
Homo sapiens
219,119,715
(1,432,155 x 153)
26 43 84 by_platform
by_series
85 Clonal evolution and devolution following chemotherapy in adult acute myelogenous leukemia (GSE41646) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of Michigan 2012-10-17 Homo sapiens
Homo sapiens
218,172,104
(1,880,794 x 116)
78 38 by_platform
by_series
86 The CURELUNG Project from the Epigenetics Side (Patients dataset) (GSE39279) [Bead Array] Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) (GPL13534) IDIBELL 2012-07-11 Homo sapiens
Homo sapiens
215,596,188
(485,577 x 444)
444 by_platform
by_series
87 Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome (GSE19949) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of Zurich 2010-01-19 Homo sapiens
Homo sapiens
214,410,516
(1,880,794 x 114)
114 by_platform
by_series
88 Epigenomic Approaches to explaining Metabolic Memory in the Epidemiology of Diabetes Intervention and Complications (EDIC) Study (GSE47385) [Oligo Array] NimbleGen Human ChIP-CHIP 3 x 720k REFSEQ Promoter Array [090618_HG18_Refseq_Prom_ChIP and 100718_HG18_Refseq_Prom_ChIP] (GPL15802) City of Hope 2013-05-26 Homo sapiens
Homo sapiens
213,985,800
(713,286 x 300)
300 by_platform
by_series
89 Genotyping in Neuroblastoma Primary tumors (GSE19385) [Bead Array] Illumina HumanHap550 Genotyping BeadChip v1 (GPL6433) Childrens Hospital of Philadelphia 2009-12-08 Homo sapiens
Homo sapiens
211,033,760
(555,352 x 380)
380 by_platform
by_series
90 Identification of novel sub-microscopic copy number aberrations in adult acute myeloid leukemia (GSE20672) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) Queen Mary University of London 2010-03-08 Homo sapiens
Homo sapiens
210,648,928
(1,880,794 x 112)
112 by_platform
by_series
91 The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts (GSE53261) [Bead Array] Illumina Human1M-Duov3 DNA Analysis BeadChip (Human1M-Duov3_B) (GPL6984) McGill University 2013-12-12 Homo sapiens
Homo sapiens
208,658,538
(1,199,187 x 174)
174 by_platform
by_series
92 The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts [genotyping] (GSE52442) [Bead Array] Illumina Human1M-Duov3 DNA Analysis BeadChip (Human1M-Duov3_B) (GPL6984) McGill University and Génome Québec Innovation Centre 2013-11-16 Homo sapiens
Homo sapiens
208,658,538
(1,199,187 x 174)
174 by_platform
by_series
93 Affymetrix SNP 6.0 array data for carriers of prenatally diagnosed de novo balanced chromosomal rearrangements. (GSE24288) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of Copenhagen 2010-09-23 Homo sapiens
Homo sapiens
206,887,340
(1,880,794 x 110)
105 4 1 by_platform
by_series
94 High-resolution genome-wide copy number analysis of pre-invasive mucinous ovarian tumours (GSE39076) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) Peter MacCallum Cancer Centre 2012-07-03 Homo sapiens
Homo sapiens
203,125,752
(1,880,794 x 108)
108 by_platform
by_series
95 Stability of miRNA in FFPE tumour samples exhibiting degraded mRNA [Bladder samples] (GSE39016) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) Paterson Institute for Cancer Research 2012-06-29 Homo sapiens
Homo sapiens
201,933,855
(1,432,155 x 141)
141 by_platform
by_series
96 Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome (GSE9317) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) The Salk Institute 2007-10-14 Arabidopsis thaliana
Arabidopsis thaliana
197,911,040
(6,184,720 x 32)
32 by_platform
by_series
97 CG Methylation of Col, Van and reciprocal hybrids using HpaII and MspI digestion (GSE8890) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of Chicago 2007-08-28 Arabidopsis thaliana
Arabidopsis thaliana
197,911,040
(6,184,720 x 32)
32 by_platform
by_series
98 Affymetrix 250K StyI SNP array data across multiple human cancer types (GSE19399) [GeneChip] [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array (GPL3720) Broad Institute 2009-12-09 Homo sapiens
Homo sapiens
196,900,228
(238,378 x 826)
168 39 44 135 12 15 242 16 131 24 by_platform
by_series
99 Measuring cell-type specific differential methylation in human brain tissue (GSE48610) [Oligo Array] NimbleGen Human 2.0M array [091020_HG19_CHARM_HX1] (GPL13611) Johns Hopkins School of Medicine 2013-07-09 Homo sapiens
Homo sapiens
195,777,127
(2,151,397 x 91)
91 by_platform
by_series
100 The histotype-specific copy-number landscape of ovarian cancer (GSE30311) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) Duke-NUS graduate medical school 2011-06-29 Homo sapiens
Homo sapiens
191,840,988
(1,880,794 x 102)
102 by_platform
by_series
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