Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(128)
  Primates
(2)
  Rodents
(68)
  Mammals
(8)
  Vertebrates
(16)
  Invertebrates
(24)
  Plants
(97)
  Bacteria
(33)
  Viruses
(1)
  Phages
(1)
  Unclassified
(7)
  All
(385)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(92)
  Oligo Array
(208)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(2)
  All
(385)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
341 GPL8480 Agilent-015235 Rat Genome CGH Microarray 105A (G4436A) 105,072 Hiroshima University 2009-04-25 Agilent Technologies Rattus norvegicus
Rattus norvegicus
Oligo Array in situ oligonucleotide, Agilent-015235 Rat Genome CGH Microarray 105A (G4436A),
342 GPL1530 RIKEN human 21K array 21,168 Hiroshima University 2004-10-24 Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, RIKEN human 21K array, This array was made in the laboratory of Dr. Yasushi Okazaki at the Riken Genome Science Center, Yokohama Institute in Japan. The array contains 21,168 spots including 20784 spots of human cDNA clones purchased from ResGenâ„¢ (Invitrogen Corporation, Carlsbad, CA, USA) and the remaining spots are the internal and exogenous controls spotted on every subgrid as positive and negative controls. Keywords = RIKEN human 21K cDNA
343 GPL1928 CodeLink Human 20K ver4.1 20,470 Hiroshima University 2005-03-24 Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, CodeLink Human 20K ver4.1, Commercially available CodeLink UniSet Human 20K I Bioarray with 19981 human probes, 108 positive bacterial controls, and 300 negative bacterial controls. Annotation: Jul/31/2004. Keywords = CodeLink Human 20K
344 GPL11020 NIBB Xenopus laevis 4.6K 4,608 Hiroshima University 2010-10-06 Division of Morphogenesis, National Institute for Basic Biology, Nishigonaka, Myodaiji, Okazaki, Aichi 444-8585, Japan. Xenopus laevis
Xenopus laevis
cDNA Array spotted DNA/cDNA, NIBB Xenopus laevis 4.6K,
345 GPL15609 NimbleGen Saccharomyces cerevisiae 385K [2006-08-18_TI4932_60mer] 5,869 Hiroshima Institute of Technology 2012-05-25 NimbleGen Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
Oligo Array in situ oligonucleotide, NimbleGen Saccharomyces cerevisiae 385K [2006-08-18_TI4932_60mer], Design Name : 2006-08-18_TI4932_60mer Format : 385K (Arrays Per Slide: 1, Probes Per Array: 385,000, Feature Size: 16um x 16um, Slide Size: 1 x 3 (25 x 75mm)) Accession Numbers : Target Genes : 5,868 Probes per target : 20 Replicates : 3
346 GPL11323 Agilent-020186 Caenorhabditis elegans (V2) Gene Expression Microarray (Probe Name version) 43,603 Hamamatsu University School of Medicine 2010-12-15 Agilent Technologies Caenorhabditis elegans
Caenorhabditis elegans
Oligo Array in situ oligonucleotide, Agilent-020186 Caenorhabditis elegans (V2) Gene Expression Microarray (Probe Name version), Caenorhabditis elegans (Nematode) Oligo Microarray
347 GPL1524 Amersham CodeLink UniSet Mouse 20K I Bioarray 20,289 Graduate School of Medicine, Kyoto University 2004-10-21 Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, Amersham CodeLink UniSet Mouse 20K I Bioarray, CodeLink UniSet Mouse 20K I Bioarray targets ~20 000 unique, well-annotated mouse genes
348 GPL16755 Agilent-030687 Oryctolagus cuniculus kyushu_matsuo_custom [Probe Name version] 43,684 Graduate School of Medical Sciences, Kyushu University 2013-03-05 Agilent Technologies Oryctolagus cuniculus
Oryctolagus cuniculus
Oligo Array in situ oligonucleotide, Agilent-030687 Oryctolagus cuniculus kyushu_matsuo_custom [Probe Name version], Arrays of this design have barcodes that begin with 16030687 or 2530687. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
349 GPL2093 NimbleGen/GeneFrontier Medaka array 2.0 192,500 GeneFrontier Corporation 2005-05-18 GeneFrontier Corporation Oryzias latipes
Oryzias latipes
Oligo Array in situ oligonucleotide, NimbleGen/GeneFrontier Medaka array 2.0, Target sequences come from TIGR Medaka Gene Index Release 5.0 (May 17, 2004). Number of targets: 26,689 Number of probes per target: 7 Length of probes: 60mer Keywords = medaka Keywords = Oryzia latipes Keywords = high density Keywords = custom array
350 GPL5107 FilgenArray Human35k 34,592 Filgen,Inc. 2007-04-19 Filgen, Inc. Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, FilgenArray Human35k,
351 GPL6191 Filgen Array Mouse 32K Version 3.0 33,696 Filgen,Inc. 2007-11-30 Filgen, Inc. Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Filgen Array Mouse 32K Version 3.0,
352 GPL10654 Ralstonia phage RSL1 Array 1,104 Filgen,Inc. 2010-07-08 Combimatrix Ralstonia phage RSL1
Ralstonia phage RSL1
Oligo Array in situ oligonucleotide, Ralstonia phage RSL1 Array,
353 GPL8700 FilgenArray miRNA Homo sapiens V11 1,019 Filgen,Inc. 2009-06-10 Combimatrix Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, FilgenArray miRNA Homo sapiens V11,
354 GPL8699 mirVANA miRNA Bioarray V9.2 908 Filgen,Inc. 2009-06-10 Ambion, Inc. Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, mirVANA miRNA Bioarray V9.2, Manufactured using GE Healthcare’s CodeLink (TM) 3-D Gel Matrix Technology Surface type: non-adsorptive Attachment: covalent The mirVana miRNA Bioarrays are an Ambion product that is manufactured by GE Healthcare and incorporates the CodeLink™ 3-D Gel Matrix slide surface. This aqueous environment elevates the probes away from the surface of the slide, allowing for maximum interaction between the probes and targets.
355 GPL5106 mirVANA miRNA Bioarray V2 662 Filgen,Inc. 2007-04-19 Ambion, Inc. Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, mirVANA miRNA Bioarray V2, Manufactured using GE Healthcare’s CodeLink (TM) 3-D Gel Matrix Technology Surface type: non-adsorptive Attachment: covalent The mirVana miRNA Bioarrays are an Ambion product that is manufactured by GE Healthcare and incorporates the CodeLink™ 3-D Gel Matrix slide surface. This aqueous environment elevates the probes away from the surface of the slide, allowing for maximum interaction between the probes and targets.
356 GPL5105 FilgenArray miRNA384 378 Filgen,Inc. 2007-04-19 Filgen, Inc. Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus
Oligo Array spotted oligonucleotide, FilgenArray miRNA384, probe set: mirVana miRNA Probe Set_1564V1 Manufactured using SCHOTT’s Nexterion Slide E Technology Surface type: non-adsorptive Attachment: covalent The Filgen microRNA MicroArrays are a Filgen product that is manufactured by Filgen and incorporates the Nexterion Slide E
357 GPL14956 SABiosciences Human Cell Development & Differentiation miRNA PCR ArrayHuman panel [MIHS-103Z] 88 Faculty of Life Sciences, Kumamoto University 2011-12-05 SABiosciences Homo sapiens
Homo sapiens
RT-PCR RT-PCR, SABiosciences Human Cell Development & Differentiation miRNA PCR ArrayHuman panel [MIHS-103Z], catalog number : MIHS-103Z PCR assay
358 GPL14864 SABiosciences Human Dermal Fibroblastsl PCR assay panel [PAHS-013] 84 Faculty of Life Sciences, Kumamoto University 2011-11-09 SABiosciences Homo sapiens
Homo sapiens
RT-PCR RT-PCR, SABiosciences Human Dermal Fibroblastsl PCR assay panel [PAHS-013], PCR assay catalog number : PAHS-013
359 GPL15142 Ehime University Human Custom 2K array 1,830 Ehime University 2012-01-18 DNA CHIP Research (Agilent) Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Ehime University Human Custom 2K array,
360 GPL5437 ConPath Chip 4600 4,634 DNA Chip Research Inc. 2007-06-26 DNA Chip Research Inc. Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, ConPath Chip 4600, ConPath Chip 4600
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