Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(76,365)
  blood
(211,180)
  connective
(60,911)
  reproductive
(45,577)
  muscular
(29,295)
  digestive
(39,046)
  liver
(61,369)
  lung
(38,619)
  urinary
(26,574)
  endo/exo-crine
(67,274)
  embryo
(23,689)
  adult aerial structure
(15,762)
  young aerial structure
(9,385)
  root
(5,771)
  meristem/growing tissue
(2,624)
  flower/sexual organ
(3,659)
  seed/fruit/grain
(3,781)
  pooled
(57,690)
  unclassified
(322,740)
  all
(1,101,311)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM416756 A549 796,698 Whitehead Institute 2009-06-12 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens
lung A549
2 GSM538598 BGA89 278,899 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus
lung lung (redo of lja27)
3 GSM484820 Lung_pooled 3 control pigs (C) 249,407 Sun Yat-sen University 2009-12-14 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
lung pooled lung of three pigs (uninfected negative control)
4 GSM499029 Lung 168h pooled 3 infected pigs (N168) 147,432 Sun Yat-sen University 2010-01-20 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
lung pooled lung of three pigs (168h pi infected with N-PRRSV)
5 GSM499028 Lung 96h pooled 3 infected pigs (N96) 141,930 Sun Yat-sen University 2010-01-20 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
lung pooled lung of three pigs (96h pi infected with N-PRRSV)
6 GSM484822 Lung_168h_pooled 3 infected pigs (168) 133,936 Sun Yat-sen University 2009-12-14 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
lung pooled lung of three pigs (168h pi infected with H-PRRSV)
7 GSM484821 Lung_96h_pooled 3 infected pigs (H96) 126,648 Sun Yat-sen University 2009-12-14 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
lung pooled lung of three pigs (96h pi infected with H-PRRSV)
8 GSM980726 Gill Tissue Control 35,015 California State University, San Marcos 2012-08-04 [HT Sequencing] 454 GS FLX (Litopenaeus stylirostris) (GPL15903) SRA Litopenaeus stylirostris
Litopenaeus stylirostris
lung Gill Tissue Control
9 GSM495812 T. nigroviridis gills_Low calcium 2h 31,907 Centro de Ciências do Mar (CCMAR), CIMAR-Laboratório Associado 2010-01-12 [HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947) SRA Tetraodon nigroviridis
Tetraodon nigroviridis
lung Gills, exposed to low calcium water (containing 0.01 mM Ca2+), 2h
10 GSM495813 T. nigroviridis gills_control 12h 27,403 Centro de Ciências do Mar (CCMAR), CIMAR-Laboratório Associado 2010-01-12 [HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947) SRA Tetraodon nigroviridis
Tetraodon nigroviridis
lung Gills, exposed to control water containing 2.9 mM Ca2+, 12h
11 GSM495817 T. nigroviridis gills_Low calcium 12h 24,886 Centro de Ciências do Mar (CCMAR), CIMAR-Laboratório Associado 2010-01-12 [HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947) SRA Tetraodon nigroviridis
Tetraodon nigroviridis
lung Gills, exposed to low calcium water (containing 0.01 mM Ca2+), 12h
12 GSM495795 T. nigroviridis gills_control2h 24,536 Centro de Ciências do Mar (CCMAR), CIMAR-Laboratório Associado 2010-01-12 [HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947) SRA Tetraodon nigroviridis
Tetraodon nigroviridis
lung Gills, exposed to control water containing 2.9 mM Ca2+, 2h
13 GSM495815 T. nigroviridis gills_High calcium 12h 24,427 Centro de Ciências do Mar (CCMAR), CIMAR-Laboratório Associado 2010-01-12 [HT Sequencing] 454 GS FLX (Tetraodon nigroviridis) (GPL9947) SRA Tetraodon nigroviridis
Tetraodon nigroviridis
lung Gills, exposed to high calcium water (containing 10 mM Ca2+), 12h
14 GSM539870 mouse lung tissue [09-002] 16,786 NIAMS 2010-05-03 [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) SRA Mus musculus
Mus musculus
lung Mouse Lung
15 GSM980727 Gill Tissue Infected 11,020 California State University, San Marcos 2012-08-04 [HT Sequencing] 454 GS FLX (Litopenaeus stylirostris) (GPL15903) SRA Litopenaeus stylirostris
Litopenaeus stylirostris
lung Gill Tissue Infected
16 GSM1003453 Broad_ChipSeq_A549_H3K4me1_EtOH_0.02pct 0 ENCODE DCC 2012-09-13 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens
lung A549
17 GSM1003454 Broad_ChipSeq_A549_H3K9me3_EtOH_0.02pct 0 ENCODE DCC 2012-09-13 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens
lung A549
18 GSM1003455 Broad_ChipSeq_A549_H3K27me3_EtOH_0.02pct 0 ENCODE DCC 2012-09-13 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens
lung A549
19 GSM1003456 Broad_ChipSeq_A549_H3K36me3_EtOH_0.02pct 0 ENCODE DCC 2012-09-13 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens
lung A549
20 GSM1003458 Broad_ChipSeq_A549_H4K20me1_EtOH_0.02pct 0 ENCODE DCC 2012-09-13 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens
lung A549
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