Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(63,220)		   blood
(169,267)		   connective
(49,492)		   reproductive
(38,618)		   muscular
(24,498)		   digestive
(31,399)		   liver
(51,405)		   lung
(30,850)		   urinary
(18,692)		   endo/exo-crine
(55,952)		   embryo
(18,082)		   adult aerial structure
(12,032)		   young aerial structure
(8,350)		   root
(4,764)		   meristem/growing tissue
(2,248)		   flower/sexual organ
(3,045)		   seed/fruit/grain
(3,128)		   pooled
(52,306)		   unclassified
(261,596)		   all
(898,944)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
41 GSM1003612 Stanford_ChipSeq_IMR90_COREST_(sc-30189)_IgG-rab 0 UCSC ENCODE DCC 2012-09-13 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lung IMR90
42 GSM1003613 Stanford_ChipSeq_IMR90_MAZ_(ab85725)_IgG-rab 0 UCSC ENCODE DCC 2012-09-13 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lung IMR90
43 GSM1003614 Stanford_ChipSeq_IMR90_Mxi1_(AF4185)_IgG-rab 0 UCSC ENCODE DCC 2012-09-13 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lung IMR90
44 GSM1003615 Stanford_ChipSeq_IMR90_RFX5_(200-401-194)_IgG-rab 0 UCSC ENCODE DCC 2012-09-13 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lung IMR90
45 GSM1003623 Stanford_ChipSeq_IMR90_CHD1_(NB100-60411)_IgG-rab 0 UCSC ENCODE DCC 2012-09-13 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lung IMR90
46 GSM1003817 UW_DnaseDgf_Lung_adult-8wks 0 UCSC ENCODE DCC 2012-09-13 [HT Sequencing] Illumina HiSeq 2000 (Mus musculus) (GPL13112) SRA Mus musculus
Mus musculus		 lung Lung
47 GSM1004263 100% Mouse Replicate 1 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 lung mouse normal lung tissue
48 GSM1004264 100% Mouse Replicate 2 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 lung mouse normal lung tissue
49 GSM1004265 100% Mouse Replicate 3 0 University of Miami 2012-09-14 [HT Sequencing] Illumina Genome Analyzer IIx (Mus musculus) (GPL11002) SRA Mus musculus
Mus musculus		 lung mouse normal lung tissue
50 GSM1006880 UT-A_ChipSeq_Lung_OC_Input 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lung Lung_OC
51 GSM1006882 UT-A_ChipSeq_Lung_OC_CTCF 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lung Lung_OC
52 GSM1006902 GIS_RnaPet_A549_cell_longPolyA 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens		 lung A549
53 GSM1006903 GIS_RnaPet_A549_nucleus_longPolyA 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens		 lung A549
54 GSM1006908 GIS_RnaPet_IMR90_cell_longPolyA 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens		 lung IMR90
55 GSM1006909 GIS_RnaPet_A549_cytosol_longPolyA 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens		 lung A549
56 GSM1006911 GIS_RnaPet_IMR90_cytosol_longPolyA 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens		 lung IMR90
57 GSM1006913 GIS_RnaPet_IMR90_nucleus_longPolyA 0 UCSC ENCODE DCC 2012-09-20 [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) SRA Homo sapiens
Homo sapiens		 lung IMR90
58 GSM1007980 MeDIP seq 19 0 Weizmann Institute of Science 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 lung WI-38 cell culture
59 GSM1007981 MeDIP seq A39 0 Weizmann Institute of Science 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 lung WI-38 cell culture
60 GSM1007982 MeDIP seq A50 0 Weizmann Institute of Science 2012-09-21 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 lung WI-38 cell culture
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