Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(204)		   Primates
(1)		   Rodents
(191)		   Mammals
(6)		   Vertebrates
(19)		   Invertebrates
(51)		   Plants
(84)		   Bacteria
(74)		   Viruses
(1)		   Phages
(0)		   Unclassified
(1)		   All
(632)		  
  SAGE NlaIII
(8)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(5)		   GeneChip
(266)		   Tiling Array
(26)		   cDNA Array
(170)		   Oligo Array
(152)		   Bead Array
(1)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(3)		   All
(632)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
21 Expression analysis of hns mutant Salmonella (GSE4931) [cDNA Array] STv5B_MMCC (GPL1835) University of Washington 2006-05-25 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium		 103,968
(5,776 x 18) 		18 by_platform
by_series
22 CC2_Navarre_14028srpoSlowhns-_IP_pHNStagged_antiHA (GSE4881) [cDNA Array] STv6_MMCC (GPL3788) Vaccine Research Institute of San Diego 2006-05-21 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium		 69,312
(5,776 x 12) 		12 by_platform
by_series
23 Expression analysis of hns mutant Salmonella (GSE4931) [cDNA Array] STv5_MMCC (GPL1305) University of Washington 2006-05-25 Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium		 34,656
(5,776 x 6) 		6 by_platform
by_series
24 Sugarcane transcriptome - Drought response (GSE4971) [cDNA Array] SUCAST Sugarcane 2208 v1.0 (GPL3799) Universidade de São Paulo - USP 2006-06-01 Saccharum sp.,unidentified
Saccharum sp.,unidentified		 55,296
(4,608 x 12) 		12 by_platform
by_series
25 Sugarcane transcriptome - Phosphate starvation (GSE4966) [cDNA Array] SUCAST Sugarcane 2208 v1.0 (GPL3799) Universidade de São Paulo - USP 2006-06-01 Saccharum hybrid cultivar SP80-3280
Saccharum hybrid cultivar SP80-3280		 73,728
(4,608 x 16) 		16 by_platform
by_series
26 Sugarcane transcriptome - ABA treatment (GSE4968) [cDNA Array] SUCAST Sugarcane 2208 v1.0 (GPL3799) Universidade de São Paulo - USP 2006-06-01 Saccharum hybrid cultivar SP80-3280
Saccharum hybrid cultivar SP80-3280		 73,728
(4,608 x 16) 		16 by_platform
by_series
27 Sugarcane transcriptome - MeJa treatment (GSE4969) [cDNA Array] SUCAST Sugarcane 2208 v1.0 (GPL3799) Universidade de São Paulo - USP 2006-06-01 Saccharum hybrid cultivar SP80-3280
Saccharum hybrid cultivar SP80-3280		 55,296
(4,608 x 12) 		12 by_platform
by_series
28 Sugarcane transcriptome - Response to herbivory by Diatraea saccharalis (GSE4967) [cDNA Array] SUCAST Sugarcane 2208 v1.0 (GPL3799) Universidade de São Paulo - USP 2006-06-01 Saccharum hybrid cultivar SP80-3280
Saccharum hybrid cultivar SP80-3280		 36,864
(4,608 x 8) 		8 by_platform
by_series
29 Sugarcane transcriptome - Response to N2-fixing endophytic bacteria association (GSE4970) [cDNA Array] SUCAST Sugarcane 2208 v1.0 (GPL3799) Universidade de São Paulo - USP 2006-06-01 Saccharum hybrid cultivar SP70-1143
Saccharum hybrid cultivar SP70-1143		 36,864
(4,608 x 8) 		8 by_platform
by_series
30 Genetic reconstruction of a functional transcriptional regulatory network (GSE4654) [cDNA Array] UT Austin Iyer yeast 6.4k ORF-only cDNA platform (GPL3588) University of Texas at Austin 2006-04-11 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 1,729,401
(6,429 x 269) 		269 by_platform
by_series
31 Yeast FAIRE Study_Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. (GSE4736) [cDNA Array] Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based) (GPL3700) UNC-Chapel Hill 2006-04-28 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 839,646
(11,826 x 71) 		2 69 by_platform
by_series
32 Yeast FAIRE_testing wild-type and mutant strains (GSE4720) [cDNA Array] Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based) (GPL3700) UNC-Chapel Hill 2006-04-25 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 425,736
(11,826 x 36) 		2 34 by_platform
by_series
33 Yeast FAIRE_Cell Cycle Study (GSE4719) [cDNA Array] Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based) (GPL3700) UNC-Chapel Hill 2006-04-25 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 413,910
(11,826 x 35) 		35 by_platform
by_series
34 Yeast cell cycle (GSE4987) [cDNA Array] FHCRC Yeast Amplicon v1.1 (GPL1914) FHCRC 2006-06-05 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 316,800
(6,336 x 50) 		50 by_platform
by_series
35 Yeast Histone ChIP-chips_Evidence for nucleosome depletion at active regulatory regions genome-wide (Lee et al. 2004) (GSE4727) [cDNA Array] Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based)_for Lee CK et al. (GPL3704) UNC-Chapel Hill 2006-04-26 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 292,848
(12,202 x 24) 		7 17 by_platform
by_series
36 Effect of twenty-one different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiae (GSE4861) [cDNA Array] IBMMPMC_Scerevisiae_12.8k_EGT_G250E (GPL3775) Université Libre de Bruxelles 2006-05-18 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 281,600
(12,800 x 22) 		22 by_platform
by_series
37 Effect of twenty-one different nitrogen sources on global gene expression in the yeast Saccharomyces cerevisiae (GSE4861) [cDNA Array] IBMMPMC_Scerevisiae_12.8k_EGT_D290C (GPL3774) Université Libre de Bruxelles 2006-05-18 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 230,400
(12,800 x 18) 		18 by_platform
by_series
38 set1, H3K4A, set1htz1, set1htz1sir2 transcription profiles (GSE4826) [cDNA Array] UCSF Madhani S. cerevisiae ORFarray v2 (GPL3756) UCSF 2006-05-13 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 104,640
(6,540 x 16) 		16 by_platform
by_series
39 set2, set2sir4 transcription profiles (GSE4934) [cDNA Array] UCSF Madhani S. cerevisiae ORFarray v2 (GPL3819) UC San Francisco 2006-05-26 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 50,224
(6,278 x 8) 		8 by_platform
by_series
40 Functional genomic analysis of a commercial wine strain of Saccharomyces cerevisiae under differing nitrogen conditions. (GSE4887) [cDNA Array] y10 (GPL3795) Stanford Microarray Database (SMD) 2006-05-22 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 32,256
(8,064 x 4) 		4 by_platform
by_series
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