遺伝子発現バンク(GEO)目次

データセット	:	研究・目的ごとにまとめられた発現データの集合 (発現データマトリクス)
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	サンプルID	タイトル	データ数	登録機関	登録日	プラットフォーム	サンプルタイプ	生物種	臓器分類	分類の根拠黒字の強調部分が臓器分類時に用いたキーワードになります。
1	GSM113980	H.influenzae_90-1	4,971	University of Oklahoma Health Sciences Center	2006-06-12	[オリゴアレイ] Nimblegen Haemophilus influenzae Rd KW20 array 2236 (GPL3870)	RNA	Haemophilus influenzae Rd KW20	骨格筋	H. influenzae Rd KW20 grown in iron and heme deplete media for 90 minutes, replicate 1
2	GSM114029	H.influenzae_90-2	4,971	University of Oklahoma Health Sciences Center	2006-06-12	[オリゴアレイ] Nimblegen Haemophilus influenzae Rd KW20 array 2236 (GPL3870)	RNA	Haemophilus influenzae Rd KW20	骨格筋	H. influenzae Rd KW20 grown in iron and heme deplete media for 90 minutes, replicate 2
3	GSM114030	H.influenzae_90-3	4,971	University of Oklahoma Health Sciences Center	2006-06-12	[オリゴアレイ] Nimblegen Haemophilus influenzae Rd KW20 array 2236 (GPL3870)	RNA	Haemophilus influenzae Rd KW20	骨格筋	H. influenzae Rd KW20 grown in iron and heme deplete media for 90 minutes, replicate 3
4	GSM114031	H.influenzae_110-1	4,971	University of Oklahoma Health Sciences Center	2006-06-12	[オリゴアレイ] Nimblegen Haemophilus influenzae Rd KW20 array 2236 (GPL3870)	RNA	Haemophilus influenzae Rd KW20	骨格筋	H. influenzae Rd KW20 grown in iron and heme deplete media for 90 minutes, then supplemented with Fe and Heme, replicate 1
5	GSM114032	H.influenzae_110-2	4,971	University of Oklahoma Health Sciences Center	2006-06-12	[オリゴアレイ] Nimblegen Haemophilus influenzae Rd KW20 array 2236 (GPL3870)	RNA	Haemophilus influenzae Rd KW20	骨格筋	H. influenzae Rd KW20 grown in iron and heme deplete media for 90 minutes, then supplemented with Fe and Heme, replicate 2
6	GSM114033	H.influenzae_110-3	4,971	University of Oklahoma Health Sciences Center	2006-06-12	[オリゴアレイ] Nimblegen Haemophilus influenzae Rd KW20 array 2236 (GPL3870)	RNA	Haemophilus influenzae Rd KW20	骨格筋	H. influenzae Rd KW20 grown in iron and heme deplete media for 90 minutes, then supplemented with Fe and Heme, replicate 3
7	GSM201546	HI_119601_HK295Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
8	GSM201575	HI_119602_HK1220Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
9	GSM201576	HI_119604_HK1214Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
10	GSM201577	HI_119609_HK1141Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
11	GSM201578	HI_119739_HK635Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
12	GSM201579	HI_119740_HK389Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
13	GSM201580	HI_119741_HK2067Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
14	GSM201581	HI_119742_HK1219.2Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
15	GSM201582	HI_119749_HK367Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
16	GSM201583	HI_119750_2067Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
17	GSM201584	HI_119891_HK368Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
18	GSM201585	HI_119894_HK61Cy5_KW20Cy3_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
19	GSM201587	HI_120118_KW20_self_self_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.
20	GSM201653	HI_120540_KW20_self_self_new_MDS.mev.refIsIA.out	32,448	The J. Craig Venter Institute	2007-06-15	[オリゴアレイ] JCVI PFGRC Haemophilus influenzae 32K vt1 array designed primarily based on strain HK12 [FULL_FEATURE_LAYOUT] (GPL5328)	genomic	インフルエンザ菌(Haemophilus influenzae)	骨格筋	Haemophilus influenzae(Hi) is a gram-negative rod shaped bacterium that lives symbiotically in the upper respiratory tract of humans. Capsulated Hi, as well as non-capsulated strains are known to cause a number of significant infections. Recognizing and understanding the links between the phenotypic traits and the genetic background has paramount epidemiological and clinical importance. To date, a panoply of microbiological and molecular biology tools have been developed and utilized by researchers aimed at identifying the evolutionary links among strains and isolates. Comparative genomic hybridization (CGH) has been shown to be a useful tool for screening strains for their genetic content. However, there is a major limitation when CGH is conducted on a microarray based on a single reference genome. CGH results report which genes are present or absent relative to the genome. Hence the information about novel genetic content that the query strain possesses remains obscure. We report here the construction of the first Hi pan-genome microarray representing ca. 4600 features by 70-mers. In addition to those from the Rd strain, new features originate from the unfinished genome sequences present in NCBI database and from our novel gene discovery project efforts using strain HK1212. Genomes of 20 strains belonging to different phylogenetic lineages were screened for their gene loss and gain utilizing the species microarray.

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