遺伝子発現バンク(GEO)目次バージョン:2013-04-06English page
NCBI Gene Expression Omnibus (GEO) に登録されているデータを、測定技術と材料の属性に基づいて整理しました。
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データ単位 : [ データセット / サンプル / プラットフォーム ] 単位の説明>> <<説明を隠す
データセット  : 研究・目的ごとにまとめられた発現データの集合 (発現データマトリクス)
サンプル  : 測定に附された生体試料
プラットフォーム : 発現定量のための測定プロトコル
各タブ内に表示される数値は、そのタブ分類に属するデータ数です。
  ヒト
(3,705)
  霊長
(37)
  齧歯
(1,748)
  哺乳
(295)
  脊椎
(402)
  無脊椎
(1,004)
  植物
(2,170)
  バクテリア
(1,636)
  ウィルス
(78)
  ファージ
(8)
  未分類
(399)
  すべて
(11,528)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(87)
  タイリングアレイ
(49)
  cDNAアレイ
(284)
  オリゴアレイ
(1,073)
  ビーズアレイ
(0)
  タンパク質アレイ
(0)
  抗体アレイ
(0)
  RT-PCR
(3)
  HT-Seq
(129)
  その他
(11)
  すべて
(1,636)
 
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プラットフォームID タイトル プローブ数 登録機関 登録日 製作元 生物種 測定技術分類 分類の根拠
黒字の強調部分が測定技術分類時に用いたキーワードになります。
1 GPL6124 Deinococcus radiodurans 6K cDNA microarray (NC_001263, NC_001264, NC_000958, NC_000959) 6,912 Zhejiang University 2007-11-13 The Bioinformatics and Molecular Regulation Laboratory, Zhejiang University Deinococcus radiodurans
Deinococcus radiodurans
cDNAアレイ spotted DNA/cDNA, Deinococcus radiodurans 6K cDNA microarray (NC_001263, NC_001264, NC_000958, NC_000959),
2 GPL9466 Institute of Nuclear-Agricultural Sciences Deinococcus radiodurans 3166 array [condensed version] 3,166 Zhejiang University 2009-10-20 The Bioinformatics and Molecular Regulation Laboratory, Zhejiang University Deinococcus radiodurans
Deinococcus radiodurans
オリゴアレイ spotted oligonucleotide, Institute of Nuclear-Agricultural Sciences Deinococcus radiodurans 3166 array [condensed version],
3 GPL6870 YZU_E.Coli_152_V1.0 504 Yanzhou university 2008-05-17 CapitalBio Corp. Beijing, China 大腸菌(Escherichia coli)
Escherichia coli
cDNAアレイ spotted DNA/cDNA, YZU_E.Coli_152_V1.0,
4 GPL10885 JCVI PFGRC Streptococcus pneumoniae 21K v6 array designed primarily based on strain TIGR4 [full array version] 21,168 Yale University 2010-09-07 JCVI/Pathogen Functional Genomics Resource Center 肺炎球菌(Streptococcus pneumoniae)
Streptococcus pneumoniae
オリゴアレイ spotted oligonucleotide, JCVI PFGRC Streptococcus pneumoniae 21K v6 array designed primarily based on strain TIGR4 [full array version],
5 GPL10886 JCVI PFGRC Streptococcus pneumoniae 21K v7 array designed primarily based on strain TIGR4 [full array version] 21,168 Yale University 2010-09-07 JCVI/Pathogen Functional Genomics Resource Center 肺炎球菌(Streptococcus pneumoniae)
Streptococcus pneumoniae
オリゴアレイ spotted oligonucleotide, JCVI PFGRC Streptococcus pneumoniae 21K v7 array designed primarily based on strain TIGR4 [full array version],
6 GPL10890 Agilent-024963 UF_Wang_XAC array_8×15K_version 1.0 15,703 Xanthomonas axonopodis pv. citri 2010-09-08 Agilent Xanthomonas axonopodis pv. citri str. 306
Xanthomonas axonopodis pv. citri str. 306
オリゴアレイ in situ oligonucleotide, Agilent-024963 UF_Wang_XAC array_8×15K_version 1.0,
7 GPL4047 Saur2a custom-made Affymetrix array 7,792 Wyeth Research 2006-07-31 Affymetrix ブドウ球菌(Staphylococcus aureus)
Staphylococcus aureus
GeneChip in situ oligonucleotide, Saur2a custom-made Affymetrix array,
8 GPL9493 Bacillus cereus ATCC 14579, 3rd design, Agilent 8X15K 11,240 WUR 2009-10-29 Agilent Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579
オリゴアレイ in situ oligonucleotide, Bacillus cereus ATCC 14579, 3rd design, Agilent 8X15K,
9 GPL13909 JCVI PFGRC Mycobacterium smegmatis 22K v3 array designed primarily based on strain MC2 155 [ORF-centered version] 7,124 Washington University School of Medicine 2011-07-13 TIGR/J. Craig Venter Institute Mycobacterium smegmatis
Mycobacterium smegmatis
オリゴアレイ spotted oligonucleotide, JCVI PFGRC Mycobacterium smegmatis 22K v3 array designed primarily based on strain MC2 155 [ORF-centered version], This is an ORF-centered version of the GEO Platform GPL5862
10 GPL4584 WUSTL Streptococcus pyogenes 3K 3,392 Washington University School of Medicine 2006-11-22 Washington University School of Medicine 化膿レンサ球菌(Streptococcus pyogenes)
Streptococcus pyogenes
オリゴアレイ spotted oligonucleotide, WUSTL Streptococcus pyogenes 3K, An antisense oligonucleotide array based on the published genome of S. pyogenes SF370 (AE004092.1 GI:14286347) was made at the Microarray Core Facility in the Genome-Sequencing Center at Washington University (GSC). A single 60–80 mer oligonucleotide was designed to hybridize to the putative transcripts from each annotated open reading frame using 'TOP' software that was created at the GSC. To reduce complexity, probes for rRNA, tRNA and prophage-associated genes were not included, which resulted in an array consisting of probes for 1517 genes out of a total of 1752 predicted open reading frames in the SF370 genome.
11 GPL11190 WU Streptococcus pyogenes 2K 1,706 Washington University in St. Louis 2010-11-09 The microarray core facility in Washington University 化膿レンサ球菌(Streptococcus pyogenes)
Streptococcus pyogenes
オリゴアレイ spotted oligonucleotide, WU Streptococcus pyogenes 2K,
12 GPL6402 Affymetrix Helicobacter pylori Hp-AG78a520172F 1,647 Washington University in Saint Louis 2008-01-23 Affymetrix ヘリコバクター・ピロリ(Helicobacter pylori)
Helicobacter pylori
GeneChip in situ oligonucleotide, Affymetrix Helicobacter pylori Hp-AG78a520172F,
13 GPL6115 Global proteomic characterization of photosystem II complexes from Synechocystis sp. PCC 6803 218 Washington University in Saint Louis 2007-11-09 Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
その他 MS, Global proteomic characterization of photosystem II complexes from Synechocystis sp. PCC 6803, Proteins identified in photosystem II complexes from Synechocystis sp. PCC 6803
14 GPL9803 SynComm1: Synthetic Human Gut Community GeneChip, v1.0 59,833 Washington University 2009-12-15 Affymetrix Bacteroides thetaiotaomicron VPI-5482,Bacteroides sp. WH2,Ruminococcus obeum ATCC 29174,Ruminococcus torques ATCC 27756,Dorea longicatena DSM 13814,Clostridium scindens ATCC 35704,Bacteroides ovatus ATCC 8483,Bacteroides uniformis ATCC 8492,Faecalibacteri
Bacteroides thetaiotaomicron VPI-5482,Bacteroides sp. WH2,Ruminococcus obeum ATCC 29174,Ruminococcus torques ATCC 27756,Dorea longicatena DSM 13814,Clostridium scindens ATCC 35704,Bacteroides ovatus ATCC 8483,Bacteroides uniformis ATCC 8492,Faecalibacteri
GeneChip in situ oligonucleotide, SynComm1: Synthetic Human Gut Community GeneChip, v1.0,
15 GPL15492 Agilent-018970 Cyanothece custom 8x15K (Feature Number version) 15,021 Washington University 2012-04-26 Agilent Cyanothece sp. ATCC 51142
Cyanothece sp. ATCC 51142
オリゴアレイ in situ oligonucleotide, Agilent-018970 Cyanothece custom 8x15K (Feature Number version), AMADID 018970
16 GPL1821 bthetaa511044F 6,601 Washington University 2005-01-26 Bacteroides thetaiotaomicron,Bifidobacterium longum
Bacteroides thetaiotaomicron,Bifidobacterium longum
GeneChip in situ oligonucleotide, bthetaa511044F, Antisense genome array (GeneChip) querying 99% of Bacteroides thetaiotaomicron ORFs and tRNAs.
17 GPL2807 WUSTL Yersinia pestis 8.4k v.1 8,448 Washington Univeristy School of Medicine 2005-09-02 Washington University School of Medicine ペスト菌(Yersinia pestis)
Yersinia pestis
オリゴアレイ spotted oligonucleotide, WUSTL Yersinia pestis 8.4k v.1, To construct a gene-specific microarray of the Y. pestis genome, we designed 70mer oligonucleotide array elements. Predicted Y. pestis genes, encoded on both the chromosome and the three plasmids of strain CO92, were obtained from the The Wellcome Trust Sanger Institute (http://www.sanger.ac.uk/Projects/Y_pestis/). In addition genes derived from human, mouse, rat and virus were included to detect contaminating host mRNA. Oligonucleotides were designed from these sequences using ArrayOligoSelector.
18 GPL14673 WSU_Salmonella Enteritidis_11977_v1 11,977 Washington State University 2011-10-05 MYcroarray Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. enterica serovar Enteritidis
オリゴアレイ in situ oligonucleotide, WSU_Salmonella Enteritidis_11977_v1,
19 GPL8012 Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0 2,515 Waseda University 2008-12-29 Affymetrix Synechococcus elongatus PCC 7942,Synechococcus elongatus PCC 6301
Synechococcus elongatus PCC 7942,Synechococcus elongatus PCC 6301
GeneChip in situ oligonucleotide, Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0,
20 GPL15383 Agilent-020666 EHEC_EDL933_O157_H7_Antisense 15,744 Walter and Eliza Hall Institute 2012-03-27 Agilent Technologies 大腸菌(Escherichia coli)
Escherichia coli
オリゴアレイ in situ oligonucleotide, Agilent-020666 EHEC_EDL933_O157_H7_Antisense, EHEC EDL933 O157:H7 from plasmid NC_007414 chromosome NC_002655 Arrays of this design have barcodes that begin with 16020666 or 2520666. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
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