遺伝子発現バンク(GEO)目次バージョン:2014-04-12English page
NCBI Gene Expression Omnibus (GEO) に登録されているデータを、測定技術と材料の属性に基づいて整理しました。
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データ単位 : [ データセット / サンプル / プラットフォーム ] 単位の説明>> <<説明を隠す
データセット  : 研究・目的ごとにまとめられた発現データの集合 (発現データマトリクス)
サンプル  : 測定に附された生体試料
プラットフォーム : 発現定量のための測定プロトコル
各タブ内に表示される数値は、そのタブ分類に属するデータ数です。
  ヒト
(3,985)
  霊長
(80)
  齧歯
(1,907)
  哺乳
(359)
  脊椎
(450)
  無脊椎
(1,139)
  植物
(2,490)
  バクテリア
(1,901)
  ウィルス
(90)
  ファージ
(11)
  未分類
(542)
  すべて
(13,032)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(98)
  タイリングアレイ
(59)
  cDNAアレイ
(290)
  オリゴアレイ
(1,179)
  ビーズアレイ
(0)
  タンパク質アレイ
(0)
  抗体アレイ
(0)
  RT-PCR
(3)
  HT-Seq
(250)
  その他
(22)
  すべて
(1,901)
 
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プラットフォームID タイトル プローブ数 登録機関 登録日 製作元 生物種 測定技術分類 分類の根拠
黒字の強調部分が測定技術分類時に用いたキーワードになります。
1 GPL10230 [Vharveyis520694F] US Naval Research Laboratory V campbellii BAA-1116 whole genome microarray 12,717 US Naval Research Laboratory 2010-03-19 Affymetrix Vibrio harveyi ATCC BAA-1116
Vibrio harveyi ATCC BAA-1116
GeneChip in situ oligonucleotide, [Vharveyis520694F] US Naval Research Laboratory V campbellii BAA-1116 whole genome microarray, Affymetrix DNA microarray (Vharveyi520694F) that targets 4831 total CDS from the fully assembled and annotated V. harveyi BAA-1116 genome (Naval Research Laboratory sequencing effort GenBank CP001223-5)
2 GPL162 [uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip 5,355 University of Wyoming 2002-05-10 Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1
GeneChip in situ oligonucleotide, [uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip, 4242 candidate protein-encoding gene models Keywords = genechip Keywords = microarray Keywords = expression profile Keywords = transcription
3 GPL9209 [TTHB8401a520105F] Riken Thermus thermophilus HB8 4K mRNA custom array, library Rev.2 3,492 RIKEN Harima Institute 2009-09-17 Affymetrix Thermus thermophilus HB8
Thermus thermophilus HB8
GeneChip in situ oligonucleotide, [TTHB8401a520105F] Riken Thermus thermophilus HB8 4K mRNA custom array, library Rev.2,
4 GPL18063 [TR_RCH2a520699F] Rhodobacter capsulatus 4,125 MÄ°ddle East Technical University 2013-12-13 Affymetrix Rhodobacter capsulatus
Rhodobacter capsulatus
GeneChip in situ oligonucleotide, [TR_RCH2a520699F] Rhodobacter capsulatus,
5 GPL18529 [thaiLANLa520655F] Custom Affymetrix Burkholderia thailandensis E264 8k chip 8,711 Los Alamos National Lab 2014-04-03 Affymetrix, Inc. Burkholderia thailandensis E264
Burkholderia thailandensis E264
GeneChip in situ oligonucleotide, [thaiLANLa520655F] Custom Affymetrix Burkholderia thailandensis E264 8k chip, A custom Affymetrix microarray was designed using Burkholderia thailandensis E264 gene annotations from Pathema and included 8711 probe sets targeting 5557 protein-coding genes and 2908 intergenic regions (IGRs) longer than 90 bases on the plus strand
6 GPL4519 [TB-All-Antisense] Affymetrix M. tuberculosis Antisense Array 6,022 Affymetrix, Inc. 2006-11-03 Affymetrix Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
GeneChip in situ oligonucleotide, [TB-All-Antisense] Affymetrix M. tuberculosis Antisense Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Array name: TB-All-Antisense Part Number: 510285 Organism: Mycobacterium tuberculosis strain H37Rv Genome assembly: NC_000962.2 NetAffx version: Oct 2006 CSV version: 1.0 This annotation table was derived Affymetrix CSV file TB-All-Antisense_annot.csv [Version 1.0, 2006-10-31]. Appended README provides a guide to the contents of the CSV file containing annotations for the probe sets on the Affymetrix M. tuberculosis antisense array.
7 GPL10397 [S_pneumoni530157] Affymetrix Streptococcus pneumoniae TIGR4 Array 3,025 NCBI/NLM/NIH 2010-05-06 Affymetrix Streptococcus pneumoniae TIGR4
Streptococcus pneumoniae TIGR4
GeneChip in situ oligonucleotide, [S_pneumoni530157] Affymetrix Streptococcus pneumoniae TIGR4 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
8 GPL1339 [S_aureus] Affymetrix S. aureus Genome Array 7,775 Affymetrix, Inc. 2004-07-09 Affymetrix ブドウ球菌(Staphylococcus aureus)
Staphylococcus aureus
GeneChip in situ oligonucleotide, [S_aureus] Affymetrix S. aureus Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 Oct 18, 2012: annotation table updated with netaffx build 32
9 GPL9803 [SynComm1a520717] SynComm1: Synthetic Human Gut Community GeneChip, v1.0 59,833 Washington University School of Medicine 2009-12-15 Affymetrix Bacteroides thetaiotaomicron VPI-5482,Bacteroides sp. WH2,Ruminococcus obeum ATCC 29174,Ruminococcus torques ATCC 27756,Dorea longicatena DSM 13814,Clostridium scindens ATCC 35704,Bacteroides ovatus ATCC 8483,Bacteroides uniformis ATCC 8492,Faecalibacteri
Bacteroides thetaiotaomicron VPI-5482,Bacteroides sp. WH2,Ruminococcus obeum ATCC 29174,Ruminococcus torques ATCC 27756,Dorea longicatena DSM 13814,Clostridium scindens ATCC 35704,Bacteroides ovatus ATCC 8483,Bacteroides uniformis ATCC 8492,Faecalibacteri
GeneChip in situ oligonucleotide, [SynComm1a520717] SynComm1: Synthetic Human Gut Community GeneChip, v1.0,
10 GPL8012 [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0 2,515 Waseda University 2008-12-29 Affymetrix Synechococcus elongatus PCC 7942,Synechococcus elongatus PCC 6301
Synechococcus elongatus PCC 7942,Synechococcus elongatus PCC 6301
GeneChip in situ oligonucleotide, [Syel6301a520114F] Affymetrix Custom GeneChip Synechococcus 2515 ORFs v1.0,
11 GPL17476 [STYLMONOa520430F] Affymetrix S. enterica subsp. enterica serovar Typhimurium str. LT2 and L.monocytogenes EGD-e array 4,778 Stanford University 2013-07-22 Affymetrix Salmonella enterica subsp. enterica serovar Typhimurium str. LT2,Listeria monocytogenes EGD-e
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2,Listeria monocytogenes EGD-e
GeneChip in situ oligonucleotide, [STYLMONOa520430F] Affymetrix S. enterica subsp. enterica serovar Typhimurium str. LT2 and L.monocytogenes EGD-e array,
12 GPL10364 [SBRI/Sherman]-Mtb-10368-v1.0 4,297 Seattle Biomedical Research Institute 2010-04-29 Seattle Biomedical Research Institute 結核菌(Mycobacterium tuberculosis)
Mycobacterium tuberculosis
オリゴアレイ spotted oligonucleotide, [SBRI/Sherman]-Mtb-10368-v1.0,
13 GPL4692 [RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3 23,015 NIH 2006-12-21 Affymetrix Coxiella burnetii,Rickettsia rickettsii,Chlamydia muridarum,Chlamydophila pneumoniae AR39,Staphylococcus epidermidis RP62A,Staphylococcus epidermidis ATCC 12228,Staphylococcus aureus subsp. aureus MW2,Borrelia burgdorferi B31,Coxiella burnetii RSA 493,Chl
Coxiella burnetii,Rickettsia rickettsii,Chlamydia muridarum,Chlamydophila pneumoniae AR39,Staphylococcus epidermidis RP62A,Staphylococcus epidermidis ATCC 12228,Staphylococcus aureus subsp. aureus MW2,Borrelia burgdorferi B31,Coxiella burnetii RSA 493,Chl
GeneChip in situ oligonucleotide, [RMLchip3a520351] Affymetrix RML Custom Pathogenic chip 3, custom pathogenic Affymetrix chip 3 manufactured for RML
14 GPL8837 [rhofispaa520260F] Custom Vibrio parahaemolyticus GeneChip Array (Affymetrix) 5,189 University of Iowa 2009-07-09 Affymetrix Inc. Vibrio parahaemolyticus RIMD 2210633
Vibrio parahaemolyticus RIMD 2210633
GeneChip in situ oligonucleotide, [rhofispaa520260F] Custom Vibrio parahaemolyticus GeneChip Array (Affymetrix),
15 GPL16546 [PhyloChip] Affymetrix G3 PhyloChip 59,522 University of California, San Francisco 2013-01-24 Affymetrix Bacteria,Archaea
Bacteria,Archaea
GeneChip in situ oligonucleotide, [PhyloChip] Affymetrix G3 PhyloChip,
16 GPL18000 [PhyloChip] Affymetrix G2 PhyloChip (Nov2013v) 10,979 University of California San Francisco 2013-11-27 Affymetrix Bacteria,Archaea
Bacteria,Archaea
GeneChip in situ oligonucleotide, [PhyloChip] Affymetrix G2 PhyloChip (Nov2013v), new classification of the GPL15537 probes/annotations
17 GPL15537 [PhyloChip] Affymetrix G2 PhyloChip 8,741 University of California at San Francisco 2012-05-08 Affymetrix Bacteria,Archaea
Bacteria,Archaea
GeneChip in situ oligonucleotide, [PhyloChip] Affymetrix G2 PhyloChip, 16S PhyloChip Probes target 16S rRNA genes. Probesets represent operational taxonomic units (OTUs).
18 GPL6591 [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array 0 Tohoku University 2008-03-17 Affymetrix Pseudomonas
Pseudomonas
タイリングアレイ in situ oligonucleotide, [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array, This is an Affymetrix custom-commercial tiling array that covers the IncP-7 plasmid pCAR1 (RefSeq: NC_004444) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FF-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FR-3.bpmap represents the reverse strand of pCAR1.
19 GPL84 [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array 5,900 Affymetrix, Inc. 2002-02-19 Affymetrix 緑膿菌(Pseudomonas aeruginosa)
Pseudomonas aeruginosa
GeneChip in situ oligonucleotide, [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This GeneChip probe array is a powerful tool for monitoring trascriptional regulation and antimicrobial agent response of P. aeruginosa. The array represents the annotated genome of P. aeruginosa strain PA01 and includes 5,549 protein-coding sequences, 18 tRNA genes, a representative of the ribosomal RNA cluster and 117 genes present in strains other than PA01. In addition, 199 probe sets corresponding to all intergenic regions exceeding 600 base pairs have been included. The selected probes have been screened against sequence homologies in the existing database of human genes. Keywords = high density oligonucleotide array
20 GPL11207 [P-putidaa530009N] Helmholtz Centre for Infection Research Pseudomonas putida 8K array 8,173 Munich University Hospital 2010-11-15 Affymetrix Pseudomonas putida KT2440
Pseudomonas putida KT2440
GeneChip in situ oligonucleotide, [P-putidaa530009N] Helmholtz Centre for Infection Research Pseudomonas putida 8K array, The microarrays includes 7,781 probe sets: 5,338 representing 5,350 annotated genes or open reading frames (orfs), and 2,443 targeting intergenic regions.
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