遺伝子発現バンク(GEO)目次バージョン:2014-04-12English page
NCBI Gene Expression Omnibus (GEO) に登録されているデータを、測定技術と材料の属性に基づいて整理しました。

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データ単位 : [ データセット / サンプル / プラットフォーム ] 単位の説明>> <<説明を隠す
データセット  : 研究・目的ごとにまとめられた発現データの集合 (発現データマトリクス)
サンプル  : 測定に附された生体試料
プラットフォーム : 発現定量のための測定プロトコル
各タブ内に表示される数値は、そのタブ分類に属するデータ数です。
  ヒト
(615,734)
  霊長
(5,814)
  齧歯
(225,055)
  哺乳
(20,968)
  脊椎
(22,581)
  無脊椎
(46,584)
  植物
(107,706)
  バクテリア
(45,091)
  ウィルス
(1,432)
  ファージ
(112)
  未分類
(6,986)
  すべて
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  タイリングアレイ
(24,730)
  cDNAアレイ
(109,124)
  オリゴアレイ
(288,250)
  ビーズアレイ
(148,432)
  タンパク質アレイ
(5)
  抗体アレイ
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  その他
(13,899)
  すべて
(1,101,311)
 
 
(348)
 
(229)
  結合
(120)
  生殖
(104)
 
(67)
  消化
(75)
 
(29)
 
(108)
 
(0)
  分泌
(210)
  胎児
(0)
  地上構造
(0)
  若い地上構造
(1)
 
(0)
  成長点
(0)
  花・生殖
(0)
  種子・果実
(0)
  混合
(95)
  分類不能
(108)
  すべて
(1,697)
 
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サンプルID タイトル データ数 登録機関 登録日 プラットフォーム サンプルタイプ 生物種 臓器分類 分類の根拠
黒字の強調部分が臓器分類時に用いたキーワードになります。
1 GSM298187 0 Hours Resistant 2,738,110 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
mock inoculated leaves
2 GSM298189 12 Hours Resistant 1,607,776 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
12 hpi leaves
3 GSM298188 0 Hours Susceptible 1,355,986 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
mock inoculated leaves
4 GSM298192 72 Hours Susceptible 1,244,455 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
72 hpi leaves
5 GSM298191 72 Hours Resistant 1,158,776 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
72 hpi leaves
6 GSM298190 12 Hours Susceptible 1,099,531 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
12 hpi leaves
7 GSM384141 LSAGE_Testis_Embryonal_Carcinoma_CL_hs0212 795,025 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE ヒト(Homo sapiens)
Homo sapiens
精巣 testis, cancer, cell line, long sage, slx-sage, solexa sage, adult, male
8 GSM414746 tag of rice booting panicle 793,637 Beijing Genomics Institute at Shenzhen 2009-06-08 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (GPL8684) SAGE イネ(Oryza sativa)
Oryza sativa
花・生殖 tag of rice booting panicle
9 GSM414747 tag of rice callus 717,904 Beijing Genomics Institute at Shenzhen 2009-06-08 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (GPL8684) SAGE イネ(Oryza sativa)
Oryza sativa
カルス callus of rice
10 GSM160696 Human_R_H3K27me3 542,347 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MAppping Technique) [NlaIII: Homo Sapiens] tag list (GPL4812) genomic ヒト(Homo sapiens)
Homo sapiens
分類不能 source_name:Human_R_H3K27me3 title:Human_R_H3K27me3 description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
11 GSM696473 Thalassiosira_pseudonana_CCMP1335_under_phosphorus_limitation 522,888 Woods Hole Oceanographic Institution 2011-03-23 [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) SAGE Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
分類不能 source_name:Phosphorus limited T. pseudonana CCMP1335 culture title:Thalassiosira_pseudonana_CCMP1335_under_phosphorus_limitation
12 GSM696988 Thalassiosira_pseudonana_CCMP1335_under_nutrient_replete_conditions 469,509 Woods Hole Oceanographic Institution 2011-03-23 [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) SAGE Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
分類不能 source_name:Nutrient replete T. pseudonana CCMP1335 culture title:Thalassiosira_pseudonana_CCMP1335_under_nutrient_replete_conditions
13 GSM160695 Human_A_T_H3ac 425,762 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MAppping Technique) [NlaIII: Homo Sapiens] tag list (GPL4812) genomic ヒト(Homo sapiens)
Homo sapiens
分類不能 source_name:Human_A_T_H3ac title:Human_A_T_H3ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
14 GSM160698 Human_R_T_H3ac 414,655 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MAppping Technique) [NlaIII: Homo Sapiens] tag list (GPL4812) genomic ヒト(Homo sapiens)
Homo sapiens
分類不能 source_name:Human_R_T_H3ac title:Human_R_T_H3ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
15 GSM160697 Human_R_H3K4me3 395,216 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MAppping Technique) [NlaIII: Homo Sapiens] tag list (GPL4812) genomic ヒト(Homo sapiens)
Homo sapiens
分類不能 source_name:Human_R_H3K4me3 title:Human_R_H3K4me3 description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
16 GSM384135 LSAGE_Skin_Normal_B_hs0271 382,357 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE ヒト(Homo sapiens)
Homo sapiens
皮膚 skin, normal, bulk, long sage, slx-sage, solexa sage, male
17 GSM384134 LSAGE_Skin_Melanoma_B_hs0276 378,065 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE ヒト(Homo sapiens)
Homo sapiens
皮膚 skin, cancer, bulk, long sage, slx-sage, solexa sage, male, melanoma
18 GSM384127 LSAGE_Skin_Cancer_B_hs0279 356,844 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE ヒト(Homo sapiens)
Homo sapiens
皮膚 skin, cancer, bulk, long sage, slx-sage, solexa sage, male, basal cell carcinoma
19 GSM384109 LSAGE_Eye_Retinoblastoma_B_hs0389 331,358 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE ヒト(Homo sapiens)
Homo sapiens
eye, cancer, bulk, retinoblastoma, long sage, slx-sage, solexa sage, female
20 GSM384149 LSAGE_Vein_normal_B_hs0237 322,395 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE ヒト(Homo sapiens)
Homo sapiens
静脈 LSAGE_Vein_normal_B_hs0237
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