遺伝子発現バンク(GEO)目次バージョン:2013-04-06English page
NCBI Gene Expression Omnibus (GEO) に登録されているデータを、測定技術と材料の属性に基づいて整理しました。
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データ単位 : [ データセット / サンプル / プラットフォーム ] 単位の説明>> <<説明を隠す
データセット  : 研究・目的ごとにまとめられた発現データの集合 (発現データマトリクス)
サンプル  : 測定に附された生体試料
プラットフォーム : 発現定量のための測定プロトコル
各タブ内に表示される数値は、そのタブ分類に属するデータ数です。
  ヒト
(3,705)
  霊長
(37)
  齧歯
(1,748)
  哺乳
(295)
  脊椎
(402)
  無脊椎
(1,004)
  植物
(2,170)
  バクテリア
(1,636)
  ウィルス
(78)
  ファージ
(8)
  未分類
(399)
  すべて
(11,528)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(17)
  GeneChip
(677)
  タイリングアレイ
(1,257)
  cDNAアレイ
(2,714)
  オリゴアレイ
(5,069)
  ビーズアレイ
(183)
  タンパク質アレイ
(1)
  抗体アレイ
(22)
  RT-PCR
(144)
  HT-Seq
(1,218)
  その他
(129)
  すべて
(11,528)
 
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プラットフォームID タイトル プローブ数 登録機関 登録日 製作元 生物種 測定技術分類 分類の根拠
黒字の強調部分が測定技術分類時に用いたキーワードになります。
2621 GPL1313 Amersham BioSciences CodeLinkTM Uniset Human 20K I Bioarray 20,470 The Hebrew University of Jerusalem 2004-06-28 ヒト(Homo sapiens)
Homo sapiens
cDNAアレイ spotted DNA/cDNA, Amersham BioSciences CodeLinkTM Uniset Human 20K I Bioarray, CodeLinkâ„¢ UniSet Human 20K I targets approximately 20 000 of the most well-annotated human genes published in public databases, derived from the public UniGene and RefSef databases, and sequences for design were derived from Incyteâ„¢ LifeSeqâ„¢ Gold and Foundation databases.
2622 GPL1739 Amersham Biosciences CodeLink Uniset Human I Bioarray 10,458 University of Pittsburgh 2004-12-09 ヒト(Homo sapiens)
Homo sapiens
cDNAアレイ spotted DNA/cDNA, Amersham Biosciences CodeLink Uniset Human I Bioarray, CodeLinkâ„¢ UniSet Human I targets approximately 10 000 of the most well-annotated human genes published in public databases, derived from the public UniGene and RefSeq databases, and sequences for design were derived from Incyteâ„¢ LifeSeqâ„¢ Gold and Foundation databases.
2623 GPL1966 aIW11Reverse 13,824 CSIRO Plant Industry 2005-04-18 シロイヌナズナ(Arabidopsis thaliana)
Arabidopsis thaliana
cDNAアレイ spotted DNA/cDNA, aIW11Reverse, aIW11Reverse Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
2624 GPL1965 aIW11 13,824 CSIRO Plant Industry 2005-04-18 シロイヌナズナ(Arabidopsis thaliana)
Arabidopsis thaliana
cDNAアレイ spotted DNA/cDNA, aIW11, aIW11 Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor
2625 GPL2051 aIW10 13,824 CSIRO Plant Industry 2005-05-16 シロイヌナズナ(Arabidopsis thaliana)
Arabidopsis thaliana
cDNAアレイ spotted DNA/cDNA, aIW10, aIW10 Keywords = haemoglobin, hypoxic stress, stress
2626 GPL1948 aIW09 13,824 CSIRO Plant Industry 2005-04-06 シロイヌナズナ(Arabidopsis thaliana)
Arabidopsis thaliana
cDNAアレイ spotted DNA/cDNA, aIW09, aIW09 Keywords = flowering, growth and development, gene structure and expression
2627 GPL8307 AIST Human EstrArray 120 AIST 2009-03-16 InfoGenes, Japan ヒト(Homo sapiens)
Homo sapiens
cDNAアレイ spotted DNA/cDNA, AIST Human EstrArray,
2628 GPL3762 AGRS Human 19.2k Array 19,200 St Vincents Institute 2006-05-14 Australian Genome Research Facility ヒト(Homo sapiens)
Homo sapiens
cDNAアレイ spotted DNA/cDNA, AGRS Human 19.2k Array,
2629 GPL6042 AGRF Human 8K cDNA Microarray (muscle study) 16,416 Monash University 2007-10-23 Australian Genome Reseach Facility ヒト(Homo sapiens)
Homo sapiens
cDNAアレイ spotted DNA/cDNA, AGRF Human 8K cDNA Microarray (muscle study),
2630 GPL14674 AGRF Human 8K cDNA Microarray (muscle study) 1,524 Florey Neuroscience Institutes 2011-10-05 Australian Genome Reseach Facility ヒト(Homo sapiens)
Homo sapiens
cDNAアレイ spotted DNA/cDNA, AGRF Human 8K cDNA Microarray (muscle study),
2631 GPL10762 AGRF Environmental functional gene microarray (E-FGA) 13,248 The University of Queensland 2010-08-04 Australia Genome Research Facility uncultured microorganism
uncultured microorganism
cDNAアレイ spotted DNA/cDNA, AGRF Environmental functional gene microarray (E-FGA), Custom made functional gene micoarray (E-FGA) consisting of 13,056 mRNA-enriched anonymus microbial clones from dirverse microbial communities
2632 GPL6497 AgResearch Bos taurus Clone Array Print 114 20,736 AgResearch NZ 2008-02-17 AgResearch (NZ) Ltd ウシ(Bos taurus)
Bos taurus
cDNAアレイ spotted DNA/cDNA, AgResearch Bos taurus Clone Array Print 114,
2633 GPL14587 Agilent-032957 Streptomyces bingchenggensis-1-1 10,238 Northeast Agricultural University 2011-09-19 Agilent Technologies Streptomyces bingchenggensis BCW-1
Streptomyces bingchenggensis BCW-1
cDNAアレイ spotted DNA/cDNA, Agilent-032957 Streptomyces bingchenggensis-1-1,
2634 GPL13939 Agilent-021826 UIUC Erwinia 15K.V1.0 4,860 University of Illinois 2011-07-18 Agilent Erwinia amylovora
Erwinia amylovora
cDNAアレイ spotted DNA/cDNA, Agilent-021826 UIUC Erwinia 15K.V1.0, An oligonucleotide microarray was designed at the James Hutton Institute (formerly SCRI), and synthesized by Agilent Technologies, Inc. (Palo Alto, CA). Each slide contains 8 arrays and each array has nearly 15,000 spots, containing our probes in triplicate. The main E. amylovora ATCC 49946 genome (accession NC_013971, Sebaihia et al. 2010) had 3483 target sequences (annotated genes and pseudo-genes), plus a further 483 target genes or simple gene predictions from five sequenced plasmids: plasmids 1 and 2 for the same strain (accessions NC_013972, NC_013973, Sebaihia et al. 2010), pEL60 and pUE30 (accessions NC_005246, NC_005247, Foster et al., 2004), and pEI70 (Spanish strain Erwinia amylovora IVIA1614-2a, unpublished, Lopez and Llop, personal communication). Due to the high similarity between E. amylovora ATCC 49946 plasmid 1 (NC_013972, 2.8kb) and the previously published pEA29 (NC_005706, 2.8kb, McGhee and Jones 2000), the later was not used. Up to five sense orientation candidate probes per target were designed with the Agilent eArray webtool, using temperature matching methodology, a preferred probe melting temperature of 80.0C, no 3' bias, and a target length of 60bp. Any short probes were later extended to 60bp using the Agilent linker. BLASTN (Altschul et al., 1997) and Biopython (Cock et al., 2009) were used to identify potential cross-hybridization in order to rank the candidate probes. Selecting one probe per genome target, and up to five probes per plasmid target, allowed all our probes to be present in triplicate. Using the spare array capacity for multiple plasmid probes aimed to increase the chance of hybridization with plasmid transcripts from other E. amylovora strains.
2635 GPL10162 Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) 43,603 Agilent Technologies 2010-03-10 Agilent ブタ、イノシシ(Sus scrofa)
Sus scrofa domestica
cDNAアレイ spotted DNA/cDNA, Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version),
2636 GPL10525 Agilent-017164 Homo sapiens 45,220 Uniformed Services University 2010-06-10 Agilent ヒト(Homo sapiens)
Homo sapiens
cDNAアレイ spotted DNA/cDNA, Agilent-017164 Homo sapiens,
2637 GPL10711 Agilent-012391 Human 44,290 Stanford Microarray Database (SMD) 2010-07-20 Agilent ヒト(Homo sapiens)
Homo sapiens
cDNAアレイ spotted DNA/cDNA, Agilent-012391 Human,
2638 GPL11007 Agilent SMD Print_1600 Saccharomyces bayanus and Saccharomyces cerevisiae 15,744 Stanford University 2010-10-01 Agilent Saccharomyces bayanus,Saccharomyces cerevisiae
Saccharomyces bayanus,Saccharomyces cerevisiae
cDNAアレイ spotted DNA/cDNA, Agilent SMD Print_1600 Saccharomyces bayanus and Saccharomyces cerevisiae,
2639 GPL882 Agilent Rat cDNA Microarray (G4105A) [layout A] 18,564 Agilent Technologies 2004-01-02 Agilent ドブネズミ(Rattus norvegicus)
Rattus norvegicus
cDNAアレイ spotted DNA/cDNA, Agilent Rat cDNA Microarray (G4105A) [layout A], 14,355 unique clones Sourced from Incyte's LifeSeq® Foundation 1 & 2 clone sets Barcode location:Bottom Scan Side:Front This platform should be used for the following prints: 000472_D_20020516_FSPortraitBcodeDown 000472_D_20030121_FSPortraitBcodeDown Please reference this platform if you used an array with the same layout, even if the print lot is different than specified above. The GEO staff will update the description of this platform to include additional print lots as encountered. Print-specific information should be accounted for in the sample hybridization tables (eg. NULL value insertions for spots to be ignored).
2640 GPL872 Agilent Mouse cDNA Microarray (G4104A) [layout B] 13,482 Agilent Technologies 2004-01-02 Agilent ハツカネズミ(Mus musculus)
Mus musculus
cDNAアレイ spotted DNA/cDNA, Agilent Mouse cDNA Microarray (G4104A) [layout B], 8,737 unique clones Sourced from Incyte's mouse UniGene 1 clone set Barcode location:Bottom Scan Side:Front This platform should be used for the following prints: 000490_D_20020516_FSPortraitBcodeDown 000522_D_20020801_FSPortraitBcodeDown 000522_D_20030121_FSPortraitBcodeDown Please reference this platform if you used an array with the same layout, even if the print lot is different than specified above. The GEO staff will update the description of this platform to include additional print lots as encountered. Print-specific information should be accounted for in the sample hybridization tables (eg. NULL value insertions for spots to be ignored).
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